Strain Fitness in Dechlorosoma suillum PS around Dsui_2965

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2963 and Dsui_2964 are separated by 3 nucleotidesDsui_2964 and Dsui_2965 are separated by 28 nucleotidesDsui_2965 and Dsui_2966 overlap by 4 nucleotidesDsui_2966 and Dsui_2967 are separated by 41 nucleotides Dsui_2963: Dsui_2963 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, at 3,170,916 to 3,172,208 _2963 Dsui_2964: Dsui_2964 - precorrin-2 C20-methyltransferase, at 3,172,212 to 3,173,012 _2964 Dsui_2965: Dsui_2965 - cobalamin biosynthesis protein CbiG, at 3,173,041 to 3,173,826 _2965 Dsui_2966: Dsui_2966 - cobalamin biosynthesis protein CbiG, at 3,173,823 to 3,174,230 _2966 Dsui_2967: Dsui_2967 - precorrin-3B C17-methyltransferase, at 3,174,272 to 3,175,267 _2967 Position (kb) 3173 3174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3172.068 kb on + strand, within Dsui_2963at 3172.129 kb on + strandat 3172.210 kb on - strandat 3172.359 kb on - strand, within Dsui_2964at 3172.381 kb on + strand, within Dsui_2964at 3172.498 kb on + strand, within Dsui_2964at 3172.603 kb on - strandat 3172.668 kb on + strand, within Dsui_2964at 3172.808 kb on + strand, within Dsui_2964at 3172.914 kb on - strand, within Dsui_2964at 3173.016 kb on + strandat 3173.501 kb on + strand, within Dsui_2965at 3173.693 kb on - strandat 3173.707 kb on + strand, within Dsui_2965at 3173.710 kb on - strand, within Dsui_2965at 3173.829 kb on - strandat 3173.940 kb on - strandat 3173.965 kb on + strand, within Dsui_2966at 3173.965 kb on + strand, within Dsui_2966at 3174.018 kb on + strand, within Dsui_2966at 3174.021 kb on - strandat 3174.057 kb on + strand, within Dsui_2966at 3174.299 kb on + strandat 3174.306 kb on - strandat 3174.476 kb on + strand, within Dsui_2967at 3174.505 kb on - strand, within Dsui_2967at 3174.505 kb on - strand, within Dsui_2967at 3174.694 kb on - strandat 3174.777 kb on - strandat 3174.791 kb on + strand, within Dsui_2967at 3174.796 kb on + strand, within Dsui_2967at 3174.802 kb on + strand, within Dsui_2967at 3174.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,172,068 + Dsui_2963 0.89 -0.4
3,172,129 + +1.0
3,172,210 - -2.6
3,172,359 - Dsui_2964 0.18 -2.4
3,172,381 + Dsui_2964 0.21 -2.2
3,172,498 + Dsui_2964 0.36 -0.8
3,172,603 - -0.9
3,172,668 + Dsui_2964 0.57 -0.4
3,172,808 + Dsui_2964 0.74 -1.7
3,172,914 - Dsui_2964 0.88 +0.0
3,173,016 + +0.3
3,173,501 + Dsui_2965 0.59 -1.5
3,173,693 - -2.5
3,173,707 + Dsui_2965 0.85 -0.2
3,173,710 - Dsui_2965 0.85 -2.3
3,173,829 - -2.2
3,173,940 - -3.4
3,173,965 + Dsui_2966 0.35 -0.3
3,173,965 + Dsui_2966 0.35 +0.5
3,174,018 + Dsui_2966 0.48 +1.2
3,174,021 - -2.8
3,174,057 + Dsui_2966 0.57 +1.9
3,174,299 + -0.3
3,174,306 - -1.2
3,174,476 + Dsui_2967 0.20 -1.5
3,174,505 - Dsui_2967 0.23 -0.5
3,174,505 - Dsui_2967 0.23 -1.1
3,174,694 - -3.1
3,174,777 - -2.1
3,174,791 + Dsui_2967 0.52 -0.4
3,174,796 + Dsui_2967 0.53 -1.0
3,174,802 + Dsui_2967 0.53 -0.0
3,174,805 - -2.8

Or see this region's nucleotide sequence