Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2796 and Dsui_2797 are separated by 184 nucleotides Dsui_2797 and Dsui_2798 are separated by 291 nucleotides
Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867
_2796
Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869
_2797
Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381
_2798
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2964.153 kb on + strand at 2964.268 kb on + strand, within Dsui_2796 at 2964.280 kb on + strand, within Dsui_2796 at 2964.295 kb on - strand at 2964.305 kb on - strand, within Dsui_2796 at 2964.407 kb on + strand, within Dsui_2796 at 2964.435 kb on + strand, within Dsui_2796 at 2964.450 kb on - strand at 2964.464 kb on + strand, within Dsui_2796 at 2964.521 kb on + strand, within Dsui_2796 at 2964.600 kb on - strand, within Dsui_2796 at 2964.651 kb on + strand, within Dsui_2796 at 2964.732 kb on + strand, within Dsui_2796 at 2964.750 kb on + strand, within Dsui_2796 at 2964.758 kb on - strand at 2964.910 kb on - strand at 2964.937 kb on + strand at 2964.976 kb on - strand at 2965.072 kb on + strand at 2965.080 kb on - strand at 2965.180 kb on - strand at 2965.214 kb on - strand at 2965.256 kb on + strand, within Dsui_2797 at 2965.447 kb on + strand, within Dsui_2797 at 2965.454 kb on + strand, within Dsui_2797 at 2965.558 kb on + strand, within Dsui_2797 at 2965.584 kb on + strand, within Dsui_2797 at 2965.584 kb on + strand, within Dsui_2797 at 2965.592 kb on - strand, within Dsui_2797 at 2965.649 kb on + strand, within Dsui_2797 at 2965.748 kb on + strand, within Dsui_2797 at 2965.868 kb on + strand, within Dsui_2797 at 2965.942 kb on + strand, within Dsui_2797 at 2965.981 kb on + strand, within Dsui_2797 at 2965.981 kb on + strand, within Dsui_2797 at 2966.059 kb on + strand, within Dsui_2797 at 2966.067 kb on - strand, within Dsui_2797 at 2966.098 kb on + strand, within Dsui_2797 at 2966.224 kb on + strand, within Dsui_2797 at 2966.254 kb on + strand, within Dsui_2797 at 2966.261 kb on - strand, within Dsui_2797 at 2966.261 kb on - strand, within Dsui_2797 at 2966.262 kb on - strand, within Dsui_2797 at 2966.546 kb on - strand at 2966.657 kb on - strand, within Dsui_2797 at 2966.657 kb on - strand, within Dsui_2797 at 2966.694 kb on - strand at 2966.715 kb on - strand at 2966.715 kb on - strand at 2966.738 kb on + strand at 2966.746 kb on - strand at 2966.813 kb on - strand at 2966.981 kb on - strand at 2967.011 kb on + strand at 2967.011 kb on + strand at 2967.019 kb on - strand at 2967.019 kb on - strand at 2967.063 kb on + strand at 2967.180 kb on - strand at 2967.245 kb on + strand at 2967.280 kb on + strand at 2967.288 kb on - strand, within Dsui_2798 at 2967.312 kb on - strand, within Dsui_2798 at 2967.315 kb on + strand, within Dsui_2798 at 2967.789 kb on + strand, within Dsui_2798 at 2967.789 kb on + strand, within Dsui_2798
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 2,964,153 + +0.6 2,964,268 + Dsui_2796 0.21 +0.3 2,964,280 + Dsui_2796 0.23 -0.1 2,964,295 - -2.4 2,964,305 - Dsui_2796 0.26 -0.7 2,964,407 + Dsui_2796 0.40 +0.6 2,964,435 + Dsui_2796 0.43 -0.6 2,964,450 - -0.1 2,964,464 + Dsui_2796 0.47 +0.3 2,964,521 + Dsui_2796 0.54 +0.3 2,964,600 - Dsui_2796 0.65 -1.4 2,964,651 + Dsui_2796 0.72 +0.5 2,964,732 + Dsui_2796 0.82 +0.2 2,964,750 + Dsui_2796 0.85 +0.1 2,964,758 - +0.6 2,964,910 - -2.5 2,964,937 + +0.9 2,964,976 - -3.2 2,965,072 + -0.7 2,965,080 - -2.6 2,965,180 - -2.5 2,965,214 - -3.9 2,965,256 + Dsui_2797 0.11 -1.3 2,965,447 + Dsui_2797 0.22 -1.6 2,965,454 + Dsui_2797 0.22 -2.7 2,965,558 + Dsui_2797 0.28 -1.6 2,965,584 + Dsui_2797 0.29 -2.3 2,965,584 + Dsui_2797 0.29 -0.7 2,965,592 - Dsui_2797 0.30 -1.9 2,965,649 + Dsui_2797 0.33 -3.8 2,965,748 + Dsui_2797 0.38 -1.7 2,965,868 + Dsui_2797 0.45 -0.9 2,965,942 + Dsui_2797 0.49 -1.1 2,965,981 + Dsui_2797 0.51 -1.2 2,965,981 + Dsui_2797 0.51 -2.0 2,966,059 + Dsui_2797 0.55 -0.9 2,966,067 - Dsui_2797 0.56 -1.3 2,966,098 + Dsui_2797 0.58 -2.6 2,966,224 + Dsui_2797 0.64 -2.3 2,966,254 + Dsui_2797 0.66 -1.6 2,966,261 - Dsui_2797 0.67 -2.4 2,966,261 - Dsui_2797 0.67 +0.4 2,966,262 - Dsui_2797 0.67 -0.8 2,966,546 - -1.6 2,966,657 - Dsui_2797 0.88 +0.1 2,966,657 - Dsui_2797 0.88 -2.7 2,966,694 - -0.1 2,966,715 - -0.4 2,966,715 - -0.3 2,966,738 + +0.2 2,966,746 - -0.2 2,966,813 - -0.8 2,966,981 - -2.3 2,967,011 + +0.3 2,967,011 + -1.0 2,967,019 - -0.9 2,967,019 - +1.0 2,967,063 + -0.2 2,967,180 - +0.5 2,967,245 + +0.4 2,967,280 + +0.1 2,967,288 - Dsui_2798 0.10 +0.6 2,967,312 - Dsui_2798 0.12 -0.7 2,967,315 + Dsui_2798 0.13 +0.2 2,967,789 + Dsui_2798 0.51 -1.2 2,967,789 + Dsui_2798 0.51 -1.2
Or see this region's nucleotide sequence