Strain Fitness in Dechlorosoma suillum PS around Dsui_2591

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2590 and Dsui_2591 are separated by 612 nucleotidesDsui_2591 and Dsui_2592 overlap by 1 nucleotides Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409 _2590 Dsui_2591: Dsui_2591 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,746,022 to 2,747,608 _2591 Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720 _2592 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2745.216 kb on - strand, within Dsui_2590at 2745.221 kb on - strand, within Dsui_2590at 2745.274 kb on + strandat 2745.394 kb on + strandat 2745.572 kb on - strandat 2745.601 kb on - strandat 2745.787 kb on + strandat 2745.846 kb on + strandat 2745.872 kb on + strandat 2745.914 kb on + strandat 2746.008 kb on + strandat 2746.088 kb on + strandat 2746.142 kb on - strandat 2746.148 kb on + strandat 2746.217 kb on + strand, within Dsui_2591at 2746.429 kb on + strandat 2746.611 kb on - strand, within Dsui_2591at 2746.761 kb on + strand, within Dsui_2591at 2746.788 kb on - strand, within Dsui_2591at 2746.802 kb on + strandat 2746.805 kb on - strand, within Dsui_2591at 2746.887 kb on - strand, within Dsui_2591at 2746.889 kb on + strand, within Dsui_2591at 2746.907 kb on + strand, within Dsui_2591at 2746.928 kb on - strand, within Dsui_2591at 2746.974 kb on - strand, within Dsui_2591at 2747.118 kb on + strand, within Dsui_2591at 2747.157 kb on + strand, within Dsui_2591at 2747.405 kb on - strand, within Dsui_2591at 2747.534 kb on - strandat 2747.713 kb on + strandat 2747.721 kb on - strand, within Dsui_2592at 2747.746 kb on - strand, within Dsui_2592at 2747.771 kb on - strand, within Dsui_2592at 2747.801 kb on - strand, within Dsui_2592at 2747.989 kb on + strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.046 kb on + strand, within Dsui_2592at 2748.065 kb on - strand, within Dsui_2592at 2748.084 kb on + strand, within Dsui_2592at 2748.261 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.324 kb on - strand, within Dsui_2592at 2748.334 kb on + strand, within Dsui_2592at 2748.357 kb on + strand, within Dsui_2592at 2748.373 kb on - strand, within Dsui_2592at 2748.487 kb on - strand, within Dsui_2592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
2,745,216 - Dsui_2590 0.86 -3.3
2,745,221 - Dsui_2590 0.87 -2.7
2,745,274 + -1.5
2,745,394 + +1.3
2,745,572 - +3.1
2,745,601 - -1.1
2,745,787 + -0.3
2,745,846 + -0.9
2,745,872 + +0.6
2,745,914 + -2.3
2,746,008 + -1.8
2,746,088 + +3.1
2,746,142 - -0.3
2,746,148 + -1.0
2,746,217 + Dsui_2591 0.12 -0.6
2,746,429 + -2.0
2,746,611 - Dsui_2591 0.37 -3.4
2,746,761 + Dsui_2591 0.47 -1.3
2,746,788 - Dsui_2591 0.48 -1.0
2,746,802 + +1.6
2,746,805 - Dsui_2591 0.49 +0.3
2,746,887 - Dsui_2591 0.55 -3.4
2,746,889 + Dsui_2591 0.55 -0.5
2,746,907 + Dsui_2591 0.56 +2.7
2,746,928 - Dsui_2591 0.57 -3.6
2,746,974 - Dsui_2591 0.60 -1.0
2,747,118 + Dsui_2591 0.69 -1.0
2,747,157 + Dsui_2591 0.72 -3.0
2,747,405 - Dsui_2591 0.87 -0.7
2,747,534 - -0.3
2,747,713 + +3.0
2,747,721 - Dsui_2592 0.10 -0.1
2,747,746 - Dsui_2592 0.12 -3.2
2,747,771 - Dsui_2592 0.15 -0.4
2,747,801 - Dsui_2592 0.17 -2.1
2,747,989 + Dsui_2592 0.34 -0.7
2,748,044 - Dsui_2592 0.39 +1.1
2,748,044 - Dsui_2592 0.39 -1.0
2,748,046 + Dsui_2592 0.39 -3.0
2,748,065 - Dsui_2592 0.41 -2.8
2,748,084 + Dsui_2592 0.43 +1.6
2,748,261 - Dsui_2592 0.59 -0.8
2,748,314 - Dsui_2592 0.63 -0.2
2,748,314 - Dsui_2592 0.63 -0.9
2,748,324 - Dsui_2592 0.64 -0.1
2,748,334 + Dsui_2592 0.65 -2.5
2,748,357 + Dsui_2592 0.67 -1.3
2,748,373 - Dsui_2592 0.69 -0.0
2,748,487 - Dsui_2592 0.79 -1.7

Or see this region's nucleotide sequence