Strain Fitness in Dechlorosoma suillum PS around Dsui_2559

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2558 and Dsui_2559 are separated by 383 nucleotidesDsui_2559 and Dsui_2560 are separated by 98 nucleotidesDsui_2560 and Dsui_2561 overlap by 4 nucleotides Dsui_2558: Dsui_2558 - DNA replication protein, at 2,708,937 to 2,709,671 _2558 Dsui_2559: Dsui_2559 - Protein of unknown function (DUF2523), at 2,710,055 to 2,710,408 _2559 Dsui_2560: Dsui_2560 - zonula occludens toxin, at 2,710,507 to 2,711,397 _2560 Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605 _2561 Position (kb) 2710 2711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2709.777 kb on + strandat 2709.800 kb on + strandat 2709.800 kb on + strandat 2709.941 kb on + strandat 2709.966 kb on - strandat 2710.004 kb on + strandat 2710.004 kb on + strandat 2710.124 kb on - strand, within Dsui_2559at 2710.141 kb on + strand, within Dsui_2559at 2710.149 kb on + strand, within Dsui_2559at 2710.166 kb on + strand, within Dsui_2559at 2710.191 kb on + strand, within Dsui_2559at 2710.280 kb on - strand, within Dsui_2559at 2710.280 kb on - strand, within Dsui_2559at 2710.349 kb on + strandat 2710.354 kb on + strand, within Dsui_2559at 2710.414 kb on + strandat 2710.447 kb on - strandat 2710.546 kb on - strandat 2710.596 kb on + strandat 2710.769 kb on + strand, within Dsui_2560at 2710.896 kb on - strandat 2710.973 kb on - strand, within Dsui_2560at 2710.983 kb on - strand, within Dsui_2560at 2711.031 kb on - strand, within Dsui_2560at 2711.040 kb on + strandat 2711.048 kb on - strandat 2711.131 kb on - strandat 2711.131 kb on - strand, within Dsui_2560at 2711.214 kb on - strand, within Dsui_2560at 2711.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,709,777 + -3.1
2,709,800 + -0.9
2,709,800 + -0.2
2,709,941 + -1.4
2,709,966 - -1.2
2,710,004 + -1.2
2,710,004 + -1.9
2,710,124 - Dsui_2559 0.19 +0.3
2,710,141 + Dsui_2559 0.24 -2.3
2,710,149 + Dsui_2559 0.27 -2.6
2,710,166 + Dsui_2559 0.31 -3.6
2,710,191 + Dsui_2559 0.38 -1.6
2,710,280 - Dsui_2559 0.64 -1.2
2,710,280 - Dsui_2559 0.64 -0.2
2,710,349 + +0.4
2,710,354 + Dsui_2559 0.84 -1.5
2,710,414 + -0.6
2,710,447 - -1.3
2,710,546 - -0.6
2,710,596 + +1.4
2,710,769 + Dsui_2560 0.29 -1.2
2,710,896 - -0.6
2,710,973 - Dsui_2560 0.52 -1.6
2,710,983 - Dsui_2560 0.53 -0.2
2,711,031 - Dsui_2560 0.59 -1.2
2,711,040 + +1.4
2,711,048 - -1.2
2,711,131 - -2.3
2,711,131 - Dsui_2560 0.70 +2.2
2,711,214 - Dsui_2560 0.79 -1.2
2,711,408 + +0.6

Or see this region's nucleotide sequence