Strain Fitness in Dechlorosoma suillum PS around Dsui_2503

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2501 and Dsui_2502 overlap by 4 nucleotidesDsui_2502 and Dsui_2503 are separated by 2 nucleotidesDsui_2503 and Dsui_2504 are separated by 244 nucleotidesDsui_2504 and Dsui_2505 overlap by 17 nucleotides Dsui_2501: Dsui_2501 - TniQ protein, at 2,648,166 to 2,649,332 _2501 Dsui_2502: Dsui_2502 - TniB protein, at 2,649,329 to 2,650,237 _2502 Dsui_2503: Dsui_2503 - Mu transposase/integrase, at 2,650,240 to 2,651,922 _2503 Dsui_2504: Dsui_2504 - hypothetical protein, at 2,652,167 to 2,652,547 _2504 Dsui_2505: Dsui_2505 - putative transcriptional regulator, at 2,652,531 to 2,652,830 _2505 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -3 -2 -1 0 1at 2649.364 kb on + strandat 2649.566 kb on + strand, within Dsui_2502at 2649.703 kb on + strand, within Dsui_2502at 2649.711 kb on - strand, within Dsui_2502at 2649.824 kb on - strand, within Dsui_2502at 2650.079 kb on + strand, within Dsui_2502at 2650.216 kb on - strandat 2650.238 kb on + strandat 2650.681 kb on + strandat 2650.898 kb on + strand, within Dsui_2503at 2651.250 kb on + strandat 2651.457 kb on - strand, within Dsui_2503at 2651.474 kb on + strand, within Dsui_2503at 2651.492 kb on - strand, within Dsui_2503at 2651.717 kb on - strand, within Dsui_2503at 2651.761 kb on - strandat 2651.771 kb on - strandat 2651.771 kb on - strandat 2651.816 kb on - strandat 2651.945 kb on + strandat 2651.945 kb on + strandat 2651.965 kb on - strandat 2652.015 kb on + strandat 2652.015 kb on - strandat 2652.041 kb on + strandat 2652.206 kb on + strand, within Dsui_2504at 2652.278 kb on + strand, within Dsui_2504at 2652.314 kb on - strandat 2652.417 kb on + strand, within Dsui_2504at 2652.443 kb on + strand, within Dsui_2504at 2652.462 kb on + strand, within Dsui_2504at 2652.470 kb on - strand, within Dsui_2504at 2652.495 kb on - strandat 2652.495 kb on - strand, within Dsui_2504at 2652.495 kb on - strand, within Dsui_2504

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,649,364 + -0.6
2,649,566 + Dsui_2502 0.26 -0.3
2,649,703 + Dsui_2502 0.41 +0.4
2,649,711 - Dsui_2502 0.42 +0.5
2,649,824 - Dsui_2502 0.54 -3.2
2,650,079 + Dsui_2502 0.83 -3.3
2,650,216 - -0.4
2,650,238 + +0.1
2,650,681 + -1.2
2,650,898 + Dsui_2503 0.39 -2.7
2,651,250 + +1.4
2,651,457 - Dsui_2503 0.72 -0.4
2,651,474 + Dsui_2503 0.73 -1.1
2,651,492 - Dsui_2503 0.74 -1.7
2,651,717 - Dsui_2503 0.88 -0.8
2,651,761 - +1.4
2,651,771 - -2.7
2,651,771 - -3.0
2,651,816 - -0.2
2,651,945 + -1.4
2,651,945 + -1.7
2,651,965 - -1.4
2,652,015 + -3.2
2,652,015 - -0.2
2,652,041 + -1.7
2,652,206 + Dsui_2504 0.10 +1.1
2,652,278 + Dsui_2504 0.29 +1.0
2,652,314 - -1.6
2,652,417 + Dsui_2504 0.66 +0.9
2,652,443 + Dsui_2504 0.72 +1.0
2,652,462 + Dsui_2504 0.77 -1.6
2,652,470 - Dsui_2504 0.80 -0.7
2,652,495 - -1.4
2,652,495 - Dsui_2504 0.86 -3.4
2,652,495 - Dsui_2504 0.86 -2.3

Or see this region's nucleotide sequence