Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2455 and Dsui_2456 overlap by 14 nucleotides Dsui_2456 and Dsui_2457 are separated by 56 nucleotides
Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741
_2455
Dsui_2456: Dsui_2456 - Glutaredoxin-like domain (DUF836), at 2,614,728 to 2,615,000
_2456
Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850
_2457
Position (kb)
2614
2615
2616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2613.733 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.792 kb on + strand, within Dsui_2455 at 2613.794 kb on + strand, within Dsui_2455 at 2613.902 kb on + strand, within Dsui_2455 at 2613.903 kb on + strand, within Dsui_2455 at 2613.907 kb on + strand, within Dsui_2455 at 2614.159 kb on + strand, within Dsui_2455 at 2614.167 kb on - strand at 2614.231 kb on + strand, within Dsui_2455 at 2614.248 kb on + strand, within Dsui_2455 at 2614.275 kb on + strand, within Dsui_2455 at 2614.314 kb on + strand, within Dsui_2455 at 2614.393 kb on + strand, within Dsui_2455 at 2614.460 kb on - strand at 2614.713 kb on + strand at 2614.721 kb on + strand at 2614.721 kb on - strand at 2614.723 kb on + strand at 2614.754 kb on + strand at 2614.762 kb on - strand, within Dsui_2456 at 2614.762 kb on - strand, within Dsui_2456 at 2614.764 kb on + strand, within Dsui_2456 at 2614.787 kb on + strand, within Dsui_2456 at 2614.789 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2614.963 kb on + strand, within Dsui_2456 at 2615.031 kb on + strand at 2615.055 kb on + strand at 2615.134 kb on + strand at 2615.174 kb on + strand at 2615.271 kb on + strand, within Dsui_2457 at 2615.384 kb on + strand, within Dsui_2457 at 2615.424 kb on + strand, within Dsui_2457 at 2615.704 kb on + strand, within Dsui_2457 at 2615.731 kb on + strand, within Dsui_2457 at 2615.880 kb on + strand, within Dsui_2457 at 2615.955 kb on + strand, within Dsui_2457
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 2,613,733 + Dsui_2455 0.30 +0.2 2,613,792 + Dsui_2455 0.34 +1.0 2,613,792 + Dsui_2455 0.34 +0.0 2,613,792 + Dsui_2455 0.34 +1.8 2,613,792 + Dsui_2455 0.34 +0.1 2,613,794 + Dsui_2455 0.34 -1.7 2,613,902 + Dsui_2455 0.42 +0.8 2,613,903 + Dsui_2455 0.42 +0.8 2,613,907 + Dsui_2455 0.42 +1.3 2,614,159 + Dsui_2455 0.60 +0.8 2,614,167 - -3.0 2,614,231 + Dsui_2455 0.65 +0.8 2,614,248 + Dsui_2455 0.66 +1.3 2,614,275 + Dsui_2455 0.68 +1.0 2,614,314 + Dsui_2455 0.70 +0.4 2,614,393 + Dsui_2455 0.76 +1.6 2,614,460 - +0.3 2,614,713 + +1.2 2,614,721 + +0.9 2,614,721 - -0.2 2,614,723 + +0.6 2,614,754 + +0.3 2,614,762 - Dsui_2456 0.12 +1.5 2,614,762 - Dsui_2456 0.12 -0.2 2,614,764 + Dsui_2456 0.13 +0.7 2,614,787 + Dsui_2456 0.22 +0.9 2,614,789 + Dsui_2456 0.22 +0.9 2,614,963 + Dsui_2456 0.86 +1.2 2,614,963 + Dsui_2456 0.86 +1.3 2,615,031 + -0.3 2,615,055 + +0.9 2,615,134 + -3.0 2,615,174 + -2.1 2,615,271 + Dsui_2457 0.12 -2.8 2,615,384 + Dsui_2457 0.18 -1.2 2,615,424 + Dsui_2457 0.20 -0.3 2,615,704 + Dsui_2457 0.36 +0.3 2,615,731 + Dsui_2457 0.38 -0.2 2,615,880 + Dsui_2457 0.46 -1.3 2,615,955 + Dsui_2457 0.50 -1.1
Or see this region's nucleotide sequence