Strain Fitness in Dechlorosoma suillum PS around Dsui_2420

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2419 and Dsui_2420 are separated by 99 nucleotidesDsui_2420 and Dsui_2421 overlap by 35 nucleotides Dsui_2419: Dsui_2419 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,574,539 to 2,577,538 _2419 Dsui_2420: Dsui_2420 - uncharacterized radical SAM protein YgiQ, at 2,577,638 to 2,579,956 _2420 Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223 _2421 Position (kb) 2577 2578 2579 2580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2576.660 kb on - strandat 2576.692 kb on - strand, within Dsui_2419at 2576.710 kb on + strand, within Dsui_2419at 2576.756 kb on + strand, within Dsui_2419at 2577.088 kb on + strand, within Dsui_2419at 2577.169 kb on + strand, within Dsui_2419at 2577.189 kb on + strand, within Dsui_2419at 2577.207 kb on + strand, within Dsui_2419at 2577.328 kb on - strandat 2577.424 kb on + strandat 2577.447 kb on + strandat 2577.450 kb on - strandat 2577.533 kb on + strandat 2577.597 kb on + strandat 2577.646 kb on + strandat 2577.693 kb on + strandat 2577.761 kb on + strandat 2577.809 kb on + strandat 2577.840 kb on - strandat 2577.881 kb on + strand, within Dsui_2420at 2577.896 kb on + strand, within Dsui_2420at 2577.906 kb on + strand, within Dsui_2420at 2577.948 kb on - strandat 2578.185 kb on - strandat 2578.370 kb on + strand, within Dsui_2420at 2578.370 kb on + strand, within Dsui_2420at 2578.419 kb on + strand, within Dsui_2420at 2578.449 kb on + strand, within Dsui_2420at 2578.565 kb on - strandat 2578.641 kb on + strand, within Dsui_2420at 2578.648 kb on - strandat 2578.665 kb on - strand, within Dsui_2420at 2578.689 kb on - strandat 2578.735 kb on - strand, within Dsui_2420at 2578.738 kb on + strand, within Dsui_2420at 2578.739 kb on + strand, within Dsui_2420at 2578.899 kb on + strand, within Dsui_2420at 2578.922 kb on - strandat 2578.964 kb on + strand, within Dsui_2420at 2578.980 kb on + strand, within Dsui_2420at 2579.031 kb on + strand, within Dsui_2420at 2579.043 kb on + strand, within Dsui_2420at 2579.079 kb on - strandat 2579.085 kb on + strand, within Dsui_2420at 2579.341 kb on + strand, within Dsui_2420at 2579.397 kb on - strand, within Dsui_2420at 2579.451 kb on - strand, within Dsui_2420at 2579.459 kb on + strand, within Dsui_2420at 2579.467 kb on - strandat 2579.479 kb on + strand, within Dsui_2420at 2579.480 kb on + strand, within Dsui_2420at 2579.544 kb on + strand, within Dsui_2420at 2579.552 kb on - strand, within Dsui_2420at 2579.615 kb on + strand, within Dsui_2420at 2579.914 kb on + strandat 2579.925 kb on + strandat 2579.928 kb on - strandat 2579.975 kb on + strandat 2580.005 kb on + strandat 2580.028 kb on - strandat 2580.033 kb on - strandat 2580.041 kb on + strandat 2580.111 kb on - strand, within Dsui_2421at 2580.193 kb on - strand, within Dsui_2421at 2580.251 kb on + strand, within Dsui_2421at 2580.251 kb on + strand, within Dsui_2421at 2580.254 kb on - strand, within Dsui_2421at 2580.259 kb on - strand, within Dsui_2421at 2580.263 kb on + strand, within Dsui_2421at 2580.281 kb on - strand, within Dsui_2421at 2580.291 kb on + strand, within Dsui_2421at 2580.318 kb on - strand, within Dsui_2421at 2580.323 kb on + strand, within Dsui_2421at 2580.355 kb on - strand, within Dsui_2421at 2580.383 kb on + strand, within Dsui_2421at 2580.391 kb on - strand, within Dsui_2421at 2580.406 kb on + strand, within Dsui_2421at 2580.414 kb on - strand, within Dsui_2421at 2580.427 kb on - strand, within Dsui_2421at 2580.501 kb on - strand, within Dsui_2421at 2580.502 kb on + strand, within Dsui_2421at 2580.539 kb on - strand, within Dsui_2421at 2580.642 kb on - strand, within Dsui_2421at 2580.695 kb on - strand, within Dsui_2421at 2580.738 kb on + strand, within Dsui_2421at 2580.809 kb on - strand, within Dsui_2421at 2580.841 kb on - strand, within Dsui_2421at 2580.937 kb on - strand, within Dsui_2421

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,576,660 - -2.7
2,576,692 - Dsui_2419 0.72 -0.4
2,576,710 + Dsui_2419 0.72 +1.2
2,576,756 + Dsui_2419 0.74 +0.6
2,577,088 + Dsui_2419 0.85 +0.6
2,577,169 + Dsui_2419 0.88 -0.1
2,577,189 + Dsui_2419 0.88 +1.0
2,577,207 + Dsui_2419 0.89 +1.0
2,577,328 - -3.2
2,577,424 + +1.8
2,577,447 + +0.4
2,577,450 - -1.9
2,577,533 + +0.1
2,577,597 + +0.9
2,577,646 + +0.7
2,577,693 + +0.4
2,577,761 + +0.0
2,577,809 + +0.1
2,577,840 - -0.1
2,577,881 + Dsui_2420 0.10 +0.4
2,577,896 + Dsui_2420 0.11 +1.0
2,577,906 + Dsui_2420 0.12 +0.2
2,577,948 - -0.5
2,578,185 - +0.0
2,578,370 + Dsui_2420 0.32 +1.2
2,578,370 + Dsui_2420 0.32 +0.7
2,578,419 + Dsui_2420 0.34 +1.2
2,578,449 + Dsui_2420 0.35 +1.2
2,578,565 - -0.5
2,578,641 + Dsui_2420 0.43 +0.7
2,578,648 - +0.1
2,578,665 - Dsui_2420 0.44 -0.6
2,578,689 - -1.9
2,578,735 - Dsui_2420 0.47 +0.0
2,578,738 + Dsui_2420 0.47 +0.5
2,578,739 + Dsui_2420 0.47 +0.1
2,578,899 + Dsui_2420 0.54 +0.8
2,578,922 - +0.5
2,578,964 + Dsui_2420 0.57 +1.2
2,578,980 + Dsui_2420 0.58 +0.3
2,579,031 + Dsui_2420 0.60 +0.7
2,579,043 + Dsui_2420 0.61 +2.3
2,579,079 - -0.1
2,579,085 + Dsui_2420 0.62 +0.7
2,579,341 + Dsui_2420 0.73 -0.3
2,579,397 - Dsui_2420 0.76 +0.7
2,579,451 - Dsui_2420 0.78 +0.3
2,579,459 + Dsui_2420 0.79 +0.7
2,579,467 - +0.7
2,579,479 + Dsui_2420 0.79 -0.0
2,579,480 + Dsui_2420 0.79 +0.7
2,579,544 + Dsui_2420 0.82 +0.8
2,579,552 - Dsui_2420 0.83 -0.2
2,579,615 + Dsui_2420 0.85 +0.4
2,579,914 + +0.6
2,579,925 + +0.9
2,579,928 - -1.2
2,579,975 + +0.5
2,580,005 + +0.9
2,580,028 - +0.5
2,580,033 - +0.0
2,580,041 + +1.1
2,580,111 - Dsui_2421 0.15 +0.4
2,580,193 - Dsui_2421 0.21 -0.0
2,580,251 + Dsui_2421 0.25 -0.4
2,580,251 + Dsui_2421 0.25 +0.2
2,580,254 - Dsui_2421 0.25 +0.8
2,580,259 - Dsui_2421 0.26 +0.8
2,580,263 + Dsui_2421 0.26 +0.4
2,580,281 - Dsui_2421 0.28 +0.5
2,580,291 + Dsui_2421 0.28 +0.5
2,580,318 - Dsui_2421 0.30 +0.6
2,580,323 + Dsui_2421 0.31 +0.6
2,580,355 - Dsui_2421 0.33 +0.9
2,580,383 + Dsui_2421 0.35 +0.5
2,580,391 - Dsui_2421 0.36 +0.4
2,580,406 + Dsui_2421 0.37 +0.5
2,580,414 - Dsui_2421 0.38 +0.7
2,580,427 - Dsui_2421 0.39 +0.7
2,580,501 - Dsui_2421 0.44 +0.3
2,580,502 + Dsui_2421 0.45 +0.9
2,580,539 - Dsui_2421 0.47 +0.0
2,580,642 - Dsui_2421 0.55 +0.3
2,580,695 - Dsui_2421 0.59 -0.1
2,580,738 + Dsui_2421 0.63 -1.3
2,580,809 - Dsui_2421 0.68 +1.1
2,580,841 - Dsui_2421 0.71 +1.4
2,580,937 - Dsui_2421 0.78 +2.2

Or see this region's nucleotide sequence