Strain Fitness in Dechlorosoma suillum PS around Dsui_2352

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2350 and Dsui_2351 overlap by 50 nucleotidesDsui_2351 and Dsui_2352 are separated by 121 nucleotidesDsui_2352 and Dsui_2353 are separated by 6 nucleotides Dsui_2350: Dsui_2350 - putative transcriptional regulator, at 2,503,453 to 2,503,917 _2350 Dsui_2351: Dsui_2351 - uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein, at 2,503,868 to 2,504,242 _2351 Dsui_2352: Dsui_2352 - hypothetical protein, at 2,504,364 to 2,505,068 _2352 Dsui_2353: Dsui_2353 - transcriptional regulator, at 2,505,075 to 2,505,974 _2353 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2503.515 kb on + strand, within Dsui_2350at 2503.539 kb on + strandat 2503.681 kb on + strand, within Dsui_2350at 2503.725 kb on + strandat 2503.812 kb on + strandat 2503.951 kb on + strandat 2504.091 kb on + strandat 2504.091 kb on + strandat 2504.126 kb on + strandat 2504.136 kb on + strandat 2504.379 kb on + strandat 2504.615 kb on - strandat 2504.677 kb on + strandat 2504.853 kb on + strand, within Dsui_2352at 2504.867 kb on + strand, within Dsui_2352at 2504.869 kb on - strand, within Dsui_2352at 2504.889 kb on + strand, within Dsui_2352at 2504.889 kb on + strandat 2504.906 kb on + strandat 2504.961 kb on + strand, within Dsui_2352at 2504.984 kb on + strandat 2504.996 kb on + strand, within Dsui_2352at 2505.012 kb on + strandat 2505.335 kb on + strandat 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.376 kb on - strand, within Dsui_2353at 2505.404 kb on - strand, within Dsui_2353at 2505.435 kb on + strandat 2505.468 kb on + strandat 2505.470 kb on - strand, within Dsui_2353at 2505.483 kb on - strand, within Dsui_2353at 2505.506 kb on - strand, within Dsui_2353at 2505.565 kb on + strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.688 kb on + strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.704 kb on + strandat 2505.715 kb on + strand, within Dsui_2353at 2505.730 kb on - strand, within Dsui_2353at 2505.884 kb on + strand, within Dsui_2353at 2505.892 kb on - strandat 2505.930 kb on + strandat 2505.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,503,515 + Dsui_2350 0.13 -0.9
2,503,539 + +0.4
2,503,681 + Dsui_2350 0.49 -0.8
2,503,725 + +1.4
2,503,812 + -1.9
2,503,951 + -0.9
2,504,091 + -2.4
2,504,091 + -0.9
2,504,126 + -1.1
2,504,136 + -0.5
2,504,379 + -1.7
2,504,615 - -2.7
2,504,677 + -2.1
2,504,853 + Dsui_2352 0.69 -0.9
2,504,867 + Dsui_2352 0.71 -1.6
2,504,869 - Dsui_2352 0.72 -0.9
2,504,889 + Dsui_2352 0.74 -2.9
2,504,889 + -1.7
2,504,906 + -2.3
2,504,961 + Dsui_2352 0.85 -1.6
2,504,984 + -0.1
2,504,996 + Dsui_2352 0.90 -1.6
2,505,012 + -0.4
2,505,335 + -1.9
2,505,368 + Dsui_2353 0.33 +0.5
2,505,368 + Dsui_2353 0.33 +0.7
2,505,368 + Dsui_2353 0.33 -2.1
2,505,376 - Dsui_2353 0.33 -1.3
2,505,404 - Dsui_2353 0.37 +1.6
2,505,435 + -2.7
2,505,468 + -0.5
2,505,470 - Dsui_2353 0.44 +0.5
2,505,483 - Dsui_2353 0.45 +0.0
2,505,506 - Dsui_2353 0.48 +0.4
2,505,565 + Dsui_2353 0.54 -0.6
2,505,610 - Dsui_2353 0.59 +1.5
2,505,610 - Dsui_2353 0.59 +1.3
2,505,688 + Dsui_2353 0.68 -3.8
2,505,696 - Dsui_2353 0.69 +0.1
2,505,696 - Dsui_2353 0.69 +0.8
2,505,704 + -1.7
2,505,715 + Dsui_2353 0.71 -2.8
2,505,730 - Dsui_2353 0.73 -0.4
2,505,884 + Dsui_2353 0.90 -1.4
2,505,892 - +1.1
2,505,930 + -0.9
2,505,994 - -0.1

Or see this region's nucleotide sequence