Strain Fitness in Dechlorosoma suillum PS around Dsui_2297

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2296 and Dsui_2297 are separated by 158 nucleotidesDsui_2297 and Dsui_2298 are separated by 65 nucleotidesDsui_2298 and Dsui_2299 are separated by 114 nucleotides Dsui_2296: Dsui_2296 - chemotaxis protein, at 2,450,148 to 2,450,747 _2296 Dsui_2297: Dsui_2297 - acetoacetyl-CoA synthase, at 2,450,906 to 2,452,876 _2297 Dsui_2298: Dsui_2298 - putative thioesterase, at 2,452,942 to 2,453,352 _2298 Dsui_2299: Dsui_2299 - flavin-dependent dehydrogenase, at 2,453,467 to 2,455,113 _2299 Position (kb) 2450 2451 2452 2453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2450.150 kb on - strandat 2450.187 kb on + strandat 2450.214 kb on + strand, within Dsui_2296at 2450.420 kb on + strand, within Dsui_2296at 2450.487 kb on + strand, within Dsui_2296at 2450.563 kb on + strand, within Dsui_2296at 2450.674 kb on - strandat 2450.741 kb on + strandat 2450.839 kb on - strandat 2450.938 kb on + strandat 2450.992 kb on + strandat 2450.992 kb on - strandat 2451.061 kb on - strandat 2451.139 kb on + strand, within Dsui_2297at 2451.139 kb on + strand, within Dsui_2297at 2451.407 kb on + strandat 2451.437 kb on + strand, within Dsui_2297at 2451.528 kb on + strand, within Dsui_2297at 2451.563 kb on + strand, within Dsui_2297at 2451.574 kb on + strand, within Dsui_2297at 2451.789 kb on - strand, within Dsui_2297at 2451.797 kb on - strand, within Dsui_2297at 2451.797 kb on - strandat 2451.814 kb on - strand, within Dsui_2297at 2451.834 kb on + strand, within Dsui_2297at 2451.919 kb on - strand, within Dsui_2297at 2452.082 kb on + strandat 2452.196 kb on - strand, within Dsui_2297at 2452.267 kb on - strand, within Dsui_2297at 2452.274 kb on - strand, within Dsui_2297at 2452.518 kb on + strandat 2452.687 kb on - strandat 2452.721 kb on - strandat 2452.905 kb on + strandat 2452.918 kb on - strandat 2452.929 kb on - strandat 2452.947 kb on - strandat 2453.167 kb on - strand, within Dsui_2298at 2453.199 kb on + strand, within Dsui_2298at 2453.207 kb on + strandat 2453.212 kb on + strand, within Dsui_2298at 2453.215 kb on - strand, within Dsui_2298at 2453.244 kb on + strand, within Dsui_2298at 2453.265 kb on - strand, within Dsui_2298at 2453.272 kb on + strand, within Dsui_2298at 2453.275 kb on - strand, within Dsui_2298at 2453.368 kb on + strandat 2453.368 kb on + strandat 2453.368 kb on + strandat 2453.376 kb on - strandat 2453.376 kb on - strandat 2453.645 kb on - strandat 2453.650 kb on + strand, within Dsui_2299at 2453.653 kb on - strand, within Dsui_2299at 2453.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,450,150 - -2.3
2,450,187 + +0.6
2,450,214 + Dsui_2296 0.11 +0.3
2,450,420 + Dsui_2296 0.45 +0.8
2,450,487 + Dsui_2296 0.56 -1.0
2,450,563 + Dsui_2296 0.69 +1.1
2,450,674 - -1.0
2,450,741 + +1.0
2,450,839 - -3.0
2,450,938 + +0.3
2,450,992 + +1.2
2,450,992 - +0.5
2,451,061 - -2.3
2,451,139 + Dsui_2297 0.12 +0.7
2,451,139 + Dsui_2297 0.12 +1.3
2,451,407 + -1.0
2,451,437 + Dsui_2297 0.27 -2.3
2,451,528 + Dsui_2297 0.32 -1.0
2,451,563 + Dsui_2297 0.33 -3.3
2,451,574 + Dsui_2297 0.34 -1.6
2,451,789 - Dsui_2297 0.45 +0.0
2,451,797 - Dsui_2297 0.45 -2.2
2,451,797 - -1.9
2,451,814 - Dsui_2297 0.46 +0.4
2,451,834 + Dsui_2297 0.47 +0.3
2,451,919 - Dsui_2297 0.51 -1.4
2,452,082 + -0.7
2,452,196 - Dsui_2297 0.65 -1.3
2,452,267 - Dsui_2297 0.69 -2.4
2,452,274 - Dsui_2297 0.69 -0.1
2,452,518 + +1.0
2,452,687 - -2.9
2,452,721 - +1.2
2,452,905 + -0.0
2,452,918 - +0.2
2,452,929 - -1.0
2,452,947 - -0.8
2,453,167 - Dsui_2298 0.55 -0.5
2,453,199 + Dsui_2298 0.63 -1.0
2,453,207 + -1.7
2,453,212 + Dsui_2298 0.66 -3.4
2,453,215 - Dsui_2298 0.66 +2.8
2,453,244 + Dsui_2298 0.73 -1.7
2,453,265 - Dsui_2298 0.79 -2.0
2,453,272 + Dsui_2298 0.80 -2.4
2,453,275 - Dsui_2298 0.81 +0.2
2,453,368 + +0.3
2,453,368 + +0.4
2,453,368 + +1.4
2,453,376 - +2.0
2,453,376 - +0.2
2,453,645 - -1.0
2,453,650 + Dsui_2299 0.11 -0.6
2,453,653 - Dsui_2299 0.11 -0.5
2,453,828 - -1.7

Or see this region's nucleotide sequence