Strain Fitness in Dechlorosoma suillum PS around Dsui_2272

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2271 and Dsui_2272 are separated by 215 nucleotidesDsui_2272 and Dsui_2273 are separated by 55 nucleotides Dsui_2271: Dsui_2271 - hypothetical protein, at 2,421,748 to 2,422,731 _2271 Dsui_2272: Dsui_2272 - hypothetical protein, at 2,422,947 to 2,424,431 _2272 Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691 _2273 Position (kb) 2422 2423 2424 2425Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2422.011 kb on + strandat 2422.050 kb on + strand, within Dsui_2271at 2422.066 kb on - strand, within Dsui_2271at 2422.133 kb on - strand, within Dsui_2271at 2422.287 kb on + strand, within Dsui_2271at 2422.302 kb on + strand, within Dsui_2271at 2422.310 kb on - strand, within Dsui_2271at 2422.339 kb on + strandat 2422.417 kb on + strandat 2422.453 kb on - strand, within Dsui_2271at 2422.559 kb on - strand, within Dsui_2271at 2422.574 kb on + strandat 2422.611 kb on + strandat 2422.637 kb on + strandat 2422.730 kb on - strandat 2422.741 kb on + strandat 2422.776 kb on + strandat 2422.950 kb on + strandat 2423.020 kb on - strandat 2423.159 kb on + strandat 2423.167 kb on - strand, within Dsui_2272at 2423.173 kb on - strandat 2423.244 kb on - strand, within Dsui_2272at 2423.263 kb on - strand, within Dsui_2272at 2423.279 kb on - strand, within Dsui_2272at 2423.561 kb on + strandat 2423.651 kb on + strandat 2423.762 kb on - strandat 2423.844 kb on - strand, within Dsui_2272at 2423.867 kb on + strandat 2424.259 kb on - strand, within Dsui_2272at 2424.279 kb on + strandat 2424.295 kb on + strandat 2424.327 kb on - strandat 2424.425 kb on - strandat 2424.518 kb on - strandat 2424.566 kb on + strandat 2424.574 kb on - strandat 2424.623 kb on + strandat 2424.631 kb on - strandat 2424.709 kb on - strand, within Dsui_2273at 2424.812 kb on - strand, within Dsui_2273at 2424.836 kb on - strand, within Dsui_2273at 2425.032 kb on - strand, within Dsui_2273at 2425.381 kb on - strand, within Dsui_2273

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
2,422,011 + -0.8
2,422,050 + Dsui_2271 0.31 -4.0
2,422,066 - Dsui_2271 0.32 +0.1
2,422,133 - Dsui_2271 0.39 -0.2
2,422,287 + Dsui_2271 0.55 -3.3
2,422,302 + Dsui_2271 0.56 -1.3
2,422,310 - Dsui_2271 0.57 -0.5
2,422,339 + +1.9
2,422,417 + -0.1
2,422,453 - Dsui_2271 0.72 +0.4
2,422,559 - Dsui_2271 0.82 +1.0
2,422,574 + -1.4
2,422,611 + -0.4
2,422,637 + -1.0
2,422,730 - +1.9
2,422,741 + +1.4
2,422,776 + -0.7
2,422,950 + -2.1
2,423,020 - -1.1
2,423,159 + -1.7
2,423,167 - Dsui_2272 0.15 -1.5
2,423,173 - +2.6
2,423,244 - Dsui_2272 0.20 -1.7
2,423,263 - Dsui_2272 0.21 -2.4
2,423,279 - Dsui_2272 0.22 -0.3
2,423,561 + -1.4
2,423,651 + +1.3
2,423,762 - -1.2
2,423,844 - Dsui_2272 0.60 -1.1
2,423,867 + -1.2
2,424,259 - Dsui_2272 0.88 -1.7
2,424,279 + +0.2
2,424,295 + -1.8
2,424,327 - +0.0
2,424,425 - -0.2
2,424,518 - +1.7
2,424,566 + -3.4
2,424,574 - +1.1
2,424,623 + -1.0
2,424,631 - -0.5
2,424,709 - Dsui_2273 0.10 -0.9
2,424,812 - Dsui_2273 0.15 -0.5
2,424,836 - Dsui_2273 0.16 -1.9
2,425,032 - Dsui_2273 0.25 -2.7
2,425,381 - Dsui_2273 0.41 -0.7

Or see this region's nucleotide sequence