Strain Fitness in Dechlorosoma suillum PS around Dsui_2210

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2209 and Dsui_2210 are separated by 188 nucleotidesDsui_2210 and Dsui_2211 are separated by 130 nucleotidesDsui_2211 and Dsui_2212 overlap by 7 nucleotidesDsui_2212 and Dsui_2213 are separated by 3 nucleotides Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163 _2209 Dsui_2210: Dsui_2210 - transcriptional regulator, at 2,349,352 to 2,350,092 _2210 Dsui_2211: Dsui_2211 - succinate dehydrogenase, cytochrome b556 subunit, at 2,350,223 to 2,350,615 _2211 Dsui_2212: Dsui_2212 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,350,609 to 2,350,956 _2212 Dsui_2213: Dsui_2213 - succinate dehydrogenase, flavoprotein subunit, at 2,350,960 to 2,352,753 _2213 Position (kb) 2349 2350 2351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2349.289 kb on - strandat 2349.338 kb on + strandat 2349.338 kb on + strandat 2349.348 kb on + strandat 2349.368 kb on + strandat 2349.375 kb on + strandat 2349.383 kb on + strandat 2349.428 kb on + strand, within Dsui_2210at 2349.439 kb on + strand, within Dsui_2210at 2349.506 kb on + strand, within Dsui_2210at 2349.589 kb on + strand, within Dsui_2210at 2349.702 kb on + strand, within Dsui_2210at 2349.703 kb on + strand, within Dsui_2210at 2349.862 kb on + strand, within Dsui_2210at 2349.977 kb on + strand, within Dsui_2210at 2349.987 kb on + strand, within Dsui_2210at 2350.081 kb on + strandat 2350.088 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
2,349,289 - -4.1
2,349,338 + +1.0
2,349,338 + +0.4
2,349,348 + +1.0
2,349,368 + -0.4
2,349,375 + +0.6
2,349,383 + +0.7
2,349,428 + Dsui_2210 0.10 -1.0
2,349,439 + Dsui_2210 0.12 -0.3
2,349,506 + Dsui_2210 0.21 +1.7
2,349,589 + Dsui_2210 0.32 +0.5
2,349,702 + Dsui_2210 0.47 -0.7
2,349,703 + Dsui_2210 0.47 +0.8
2,349,862 + Dsui_2210 0.69 +0.1
2,349,977 + Dsui_2210 0.84 -4.6
2,349,987 + Dsui_2210 0.86 -0.7
2,350,081 + -2.3
2,350,088 + +1.2

Or see this region's nucleotide sequence