Strain Fitness in Dechlorosoma suillum PS around Dsui_2158

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2157 and Dsui_2158 overlap by 20 nucleotidesDsui_2158 and Dsui_2159 are separated by 237 nucleotides Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624 _2157 Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252 _2158 Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758 _2159 Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2289.809 kb on + strand, within Dsui_2157at 2289.939 kb on + strand, within Dsui_2157at 2289.979 kb on + strand, within Dsui_2157at 2290.039 kb on - strandat 2290.072 kb on - strand, within Dsui_2157at 2290.397 kb on + strandat 2290.582 kb on + strandat 2290.587 kb on + strandat 2290.587 kb on + strandat 2290.653 kb on + strandat 2290.697 kb on + strand, within Dsui_2158at 2290.761 kb on + strand, within Dsui_2158at 2290.770 kb on - strandat 2291.110 kb on + strandat 2291.332 kb on - strandat 2291.434 kb on + strandat 2291.613 kb on + strandat 2291.656 kb on + strand, within Dsui_2159at 2291.670 kb on - strand, within Dsui_2159at 2291.673 kb on + strand, within Dsui_2159at 2291.673 kb on + strand, within Dsui_2159at 2291.709 kb on + strand, within Dsui_2159at 2291.760 kb on - strand, within Dsui_2159at 2291.804 kb on - strandat 2291.819 kb on + strand, within Dsui_2159at 2291.909 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.956 kb on - strandat 2292.024 kb on + strandat 2292.024 kb on + strand, within Dsui_2159at 2292.024 kb on + strand, within Dsui_2159at 2292.037 kb on - strandat 2292.039 kb on + strand, within Dsui_2159

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,289,809 + Dsui_2157 0.66 +2.3
2,289,939 + Dsui_2157 0.71 +0.5
2,289,979 + Dsui_2157 0.73 +1.7
2,290,039 - -0.7
2,290,072 - Dsui_2157 0.77 -2.4
2,290,397 + +0.5
2,290,582 + +0.2
2,290,587 + +1.3
2,290,587 + +0.8
2,290,653 + -0.4
2,290,697 + Dsui_2158 0.14 -2.3
2,290,761 + Dsui_2158 0.24 -0.6
2,290,770 - -1.0
2,291,110 + +0.4
2,291,332 - -4.0
2,291,434 + +0.9
2,291,613 + +0.5
2,291,656 + Dsui_2159 0.13 +0.6
2,291,670 - Dsui_2159 0.14 -0.8
2,291,673 + Dsui_2159 0.14 +0.2
2,291,673 + Dsui_2159 0.14 +1.3
2,291,709 + Dsui_2159 0.17 +0.1
2,291,760 - Dsui_2159 0.21 -2.8
2,291,804 - -0.5
2,291,819 + Dsui_2159 0.26 +1.0
2,291,909 + Dsui_2159 0.33 +0.7
2,291,914 + Dsui_2159 0.33 +1.0
2,291,914 + Dsui_2159 0.33 +0.7
2,291,956 - -1.5
2,292,024 + +0.0
2,292,024 + Dsui_2159 0.42 +0.8
2,292,024 + Dsui_2159 0.42 +0.5
2,292,037 - +1.3
2,292,039 + Dsui_2159 0.43 -1.8

Or see this region's nucleotide sequence