Strain Fitness in Dechlorosoma suillum PS around Dsui_2106

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2105 and Dsui_2106 are separated by 93 nucleotidesDsui_2106 and Dsui_2107 are separated by 573 nucleotides Dsui_2105: Dsui_2105 - transposase, at 2,227,868 to 2,229,358 _2105 Dsui_2106: Dsui_2106 - hypothetical protein, at 2,229,452 to 2,229,871 _2106 Dsui_2107: Dsui_2107 - hypothetical protein, at 2,230,445 to 2,231,428 _2107 Position (kb) 2229 2230Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2229.467 kb on + strandat 2229.467 kb on + strandat 2229.467 kb on + strandat 2229.467 kb on + strandat 2229.527 kb on + strand, within Dsui_2106at 2229.556 kb on - strand, within Dsui_2106at 2229.569 kb on - strand, within Dsui_2106at 2229.587 kb on + strand, within Dsui_2106at 2229.587 kb on + strand, within Dsui_2106at 2229.595 kb on - strand, within Dsui_2106at 2229.595 kb on - strand, within Dsui_2106at 2229.595 kb on - strand, within Dsui_2106at 2229.595 kb on - strand, within Dsui_2106at 2229.595 kb on - strand, within Dsui_2106at 2229.600 kb on + strand, within Dsui_2106at 2229.613 kb on - strand, within Dsui_2106at 2229.644 kb on + strand, within Dsui_2106at 2229.698 kb on - strand, within Dsui_2106at 2229.703 kb on + strand, within Dsui_2106at 2229.711 kb on - strand, within Dsui_2106at 2229.737 kb on - strand, within Dsui_2106at 2229.739 kb on + strand, within Dsui_2106at 2229.747 kb on - strand, within Dsui_2106at 2229.747 kb on - strand, within Dsui_2106at 2229.754 kb on + strand, within Dsui_2106at 2229.759 kb on + strand, within Dsui_2106at 2229.759 kb on + strandat 2229.762 kb on - strand, within Dsui_2106at 2229.767 kb on - strand, within Dsui_2106at 2229.767 kb on - strand, within Dsui_2106at 2229.777 kb on - strand, within Dsui_2106at 2229.784 kb on + strand, within Dsui_2106at 2229.820 kb on + strand, within Dsui_2106at 2229.822 kb on - strandat 2229.846 kb on - strandat 2229.846 kb on - strandat 2229.884 kb on + strandat 2229.884 kb on + strandat 2229.892 kb on - strandat 2229.894 kb on + strandat 2229.902 kb on - strandat 2229.922 kb on - strandat 2229.951 kb on - strandat 2229.970 kb on - strandat 2229.974 kb on + strandat 2229.974 kb on + strandat 2229.982 kb on - strandat 2229.982 kb on - strandat 2229.982 kb on - strandat 2230.000 kb on + strandat 2230.004 kb on - strandat 2230.018 kb on + strandat 2230.104 kb on + strandat 2230.126 kb on + strandat 2230.130 kb on - strandat 2230.130 kb on - strandat 2230.132 kb on + strandat 2230.134 kb on - strandat 2230.145 kb on - strandat 2230.149 kb on + strandat 2230.157 kb on - strandat 2230.219 kb on - strandat 2230.219 kb on - strandat 2230.219 kb on - strandat 2230.219 kb on - strandat 2230.242 kb on + strandat 2230.260 kb on - strandat 2230.300 kb on - strandat 2230.309 kb on - strandat 2230.314 kb on - strandat 2230.322 kb on - strandat 2230.349 kb on - strandat 2230.431 kb on - strandat 2230.433 kb on + strandat 2230.441 kb on - strandat 2230.441 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.460 kb on - strandat 2230.602 kb on - strand, within Dsui_2107at 2230.621 kb on + strandat 2230.657 kb on - strand, within Dsui_2107at 2230.706 kb on - strand, within Dsui_2107at 2230.710 kb on - strand, within Dsui_2107at 2230.766 kb on - strand, within Dsui_2107at 2230.813 kb on - strand, within Dsui_2107

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,229,467 + +0.1
2,229,467 + -0.5
2,229,467 + +0.9
2,229,467 + +0.2
2,229,527 + Dsui_2106 0.18 +1.1
2,229,556 - Dsui_2106 0.25 +1.2
2,229,569 - Dsui_2106 0.28 +1.0
2,229,587 + Dsui_2106 0.32 +2.4
2,229,587 + Dsui_2106 0.32 -2.5
2,229,595 - Dsui_2106 0.34 +1.8
2,229,595 - Dsui_2106 0.34 +0.2
2,229,595 - Dsui_2106 0.34 +1.7
2,229,595 - Dsui_2106 0.34 -1.4
2,229,595 - Dsui_2106 0.34 +0.2
2,229,600 + Dsui_2106 0.35 +1.0
2,229,613 - Dsui_2106 0.38 +1.2
2,229,644 + Dsui_2106 0.46 +1.2
2,229,698 - Dsui_2106 0.59 +0.6
2,229,703 + Dsui_2106 0.60 -2.5
2,229,711 - Dsui_2106 0.62 +0.9
2,229,737 - Dsui_2106 0.68 +0.7
2,229,739 + Dsui_2106 0.68 -1.6
2,229,747 - Dsui_2106 0.70 +1.6
2,229,747 - Dsui_2106 0.70 +0.7
2,229,754 + Dsui_2106 0.72 +0.1
2,229,759 + Dsui_2106 0.73 +1.6
2,229,759 + -0.4
2,229,762 - Dsui_2106 0.74 +2.4
2,229,767 - Dsui_2106 0.75 +0.4
2,229,767 - Dsui_2106 0.75 +1.4
2,229,777 - Dsui_2106 0.77 -0.0
2,229,784 + Dsui_2106 0.79 +2.6
2,229,820 + Dsui_2106 0.88 -1.7
2,229,822 - -0.4
2,229,846 - +1.4
2,229,846 - +1.0
2,229,884 + +0.2
2,229,884 + +2.0
2,229,892 - +1.6
2,229,894 + -0.3
2,229,902 - +1.7
2,229,922 - +0.5
2,229,951 - +0.4
2,229,970 - +0.6
2,229,974 + +1.2
2,229,974 + -1.7
2,229,982 - +1.5
2,229,982 - -0.5
2,229,982 - +0.8
2,230,000 + +1.2
2,230,004 - -0.2
2,230,018 + -0.2
2,230,104 + -1.4
2,230,126 + +0.6
2,230,130 - +0.6
2,230,130 - +1.5
2,230,132 + +1.4
2,230,134 - +1.1
2,230,145 - +0.4
2,230,149 + -1.4
2,230,157 - +0.0
2,230,219 - +0.0
2,230,219 - +1.3
2,230,219 - -0.5
2,230,219 - +0.3
2,230,242 + -1.3
2,230,260 - +0.7
2,230,300 - +0.6
2,230,309 - +0.9
2,230,314 - +0.7
2,230,322 - +0.9
2,230,349 - +0.6
2,230,431 - +0.9
2,230,433 + -1.2
2,230,441 - +2.2
2,230,441 - +0.1
2,230,460 - +1.4
2,230,460 - +1.1
2,230,460 - +1.0
2,230,460 - +1.0
2,230,460 - +0.2
2,230,602 - Dsui_2107 0.16 +1.0
2,230,621 + +3.5
2,230,657 - Dsui_2107 0.22 +1.0
2,230,706 - Dsui_2107 0.27 +0.9
2,230,710 - Dsui_2107 0.27 +1.3
2,230,766 - Dsui_2107 0.33 +0.9
2,230,813 - Dsui_2107 0.37 +1.1

Or see this region's nucleotide sequence