Strain Fitness in Dechlorosoma suillum PS around Dsui_2086

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2085 and Dsui_2086 are separated by 226 nucleotidesDsui_2086 and Dsui_2087 are separated by 202 nucleotidesDsui_2087 and Dsui_2088 are separated by 36 nucleotides Dsui_2085: Dsui_2085 - NADPH-dependent FMN reductase, at 2,205,698 to 2,207,074 _2085 Dsui_2086: Dsui_2086 - cytochrome c, at 2,207,301 to 2,209,391 _2086 Dsui_2087: Dsui_2087 - cytochrome c553, at 2,209,594 to 2,210,328 _2087 Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318 _2088 Position (kb) 2207 2208 2209 2210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2206.358 kb on - strandat 2206.554 kb on - strandat 2206.577 kb on - strand, within Dsui_2085at 2206.668 kb on - strandat 2206.670 kb on - strandat 2206.787 kb on - strandat 2206.867 kb on + strandat 2207.257 kb on + strandat 2207.257 kb on + strandat 2207.257 kb on + strandat 2207.257 kb on + strandat 2207.257 kb on + strandat 2207.265 kb on - strandat 2207.279 kb on + strandat 2207.600 kb on + strandat 2207.659 kb on + strand, within Dsui_2086at 2207.670 kb on + strandat 2207.675 kb on + strandat 2207.675 kb on + strandat 2207.678 kb on - strand, within Dsui_2086at 2207.786 kb on - strandat 2207.817 kb on - strandat 2207.848 kb on - strandat 2207.849 kb on + strandat 2207.937 kb on + strand, within Dsui_2086at 2208.039 kb on - strand, within Dsui_2086at 2208.077 kb on + strand, within Dsui_2086at 2208.085 kb on - strandat 2208.137 kb on + strandat 2208.200 kb on + strand, within Dsui_2086at 2208.200 kb on + strandat 2208.400 kb on + strandat 2208.457 kb on + strand, within Dsui_2086at 2208.499 kb on + strandat 2208.673 kb on - strandat 2208.679 kb on - strandat 2208.908 kb on + strand, within Dsui_2086at 2209.069 kb on + strandat 2209.087 kb on - strandat 2209.187 kb on + strandat 2209.196 kb on - strandat 2209.268 kb on - strandat 2209.288 kb on + strandat 2209.592 kb on - strandat 2209.722 kb on - strandat 2209.908 kb on + strandat 2209.908 kb on + strandat 2209.908 kb on + strandat 2209.959 kb on + strandat 2210.143 kb on + strand, within Dsui_2087at 2210.225 kb on + strandat 2210.247 kb on + strand, within Dsui_2087at 2210.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,206,358 - +0.1
2,206,554 - -0.0
2,206,577 - Dsui_2085 0.64 -2.5
2,206,668 - -0.4
2,206,670 - -1.8
2,206,787 - +1.3
2,206,867 + -0.4
2,207,257 + -1.6
2,207,257 + +1.9
2,207,257 + -3.4
2,207,257 + +0.6
2,207,257 + -1.6
2,207,265 - -2.2
2,207,279 + -0.4
2,207,600 + +1.5
2,207,659 + Dsui_2086 0.17 -1.4
2,207,670 + -3.6
2,207,675 + -1.2
2,207,675 + -1.8
2,207,678 - Dsui_2086 0.18 -2.7
2,207,786 - -1.3
2,207,817 - -1.1
2,207,848 - -1.7
2,207,849 + -0.4
2,207,937 + Dsui_2086 0.30 +0.8
2,208,039 - Dsui_2086 0.35 -3.7
2,208,077 + Dsui_2086 0.37 -2.1
2,208,085 - -2.6
2,208,137 + -3.3
2,208,200 + Dsui_2086 0.43 -2.5
2,208,200 + -1.7
2,208,400 + -0.5
2,208,457 + Dsui_2086 0.55 -0.1
2,208,499 + -1.7
2,208,673 - +1.6
2,208,679 - -2.3
2,208,908 + Dsui_2086 0.77 -3.6
2,209,069 + -2.6
2,209,087 - -2.2
2,209,187 + +0.4
2,209,196 - -2.3
2,209,268 - -1.6
2,209,288 + -2.0
2,209,592 - -0.7
2,209,722 - +1.1
2,209,908 + +0.6
2,209,908 + -0.8
2,209,908 + -3.2
2,209,959 + +0.0
2,210,143 + Dsui_2087 0.75 +0.0
2,210,225 + -0.5
2,210,247 + Dsui_2087 0.89 +1.0
2,210,255 - -3.1

Or see this region's nucleotide sequence