Strain Fitness in Dechlorosoma suillum PS around Dsui_1893

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1892 and Dsui_1893 are separated by 45 nucleotidesDsui_1893 and Dsui_1894 are separated by 36 nucleotidesDsui_1894 and Dsui_1895 overlap by 4 nucleotides Dsui_1892: Dsui_1892 - transcriptional regulator, at 1,993,079 to 1,993,966 _1892 Dsui_1893: Dsui_1893 - putative membrane protein, at 1,994,012 to 1,994,383 _1893 Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325 _1894 Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894 _1895 Position (kb) 1994 1995Strain fitness (log2 ratio) -2 -1 0 1 2at 1993.134 kb on - strandat 1993.492 kb on - strandat 1993.497 kb on + strand, within Dsui_1892at 1993.497 kb on + strand, within Dsui_1892at 1993.616 kb on + strand, within Dsui_1892at 1993.617 kb on + strand, within Dsui_1892at 1993.617 kb on + strand, within Dsui_1892at 1993.697 kb on + strand, within Dsui_1892at 1993.705 kb on - strand, within Dsui_1892at 1993.770 kb on - strand, within Dsui_1892at 1993.837 kb on + strand, within Dsui_1892at 1993.879 kb on + strandat 1993.880 kb on - strandat 1993.887 kb on - strandat 1993.887 kb on - strandat 1994.055 kb on + strand, within Dsui_1893at 1994.289 kb on - strandat 1994.325 kb on + strand, within Dsui_1893at 1994.345 kb on - strand, within Dsui_1893at 1994.367 kb on + strandat 1994.441 kb on + strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.485 kb on - strandat 1994.593 kb on + strand, within Dsui_1894at 1994.778 kb on + strandat 1994.867 kb on - strand, within Dsui_1894at 1994.910 kb on - strand, within Dsui_1894at 1994.993 kb on + strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,993,134 - -0.7
1,993,492 - +2.2
1,993,497 + Dsui_1892 0.47 +0.4
1,993,497 + Dsui_1892 0.47 +0.1
1,993,616 + Dsui_1892 0.60 +0.5
1,993,617 + Dsui_1892 0.61 +0.5
1,993,617 + Dsui_1892 0.61 +0.8
1,993,697 + Dsui_1892 0.70 +0.3
1,993,705 - Dsui_1892 0.70 -0.8
1,993,770 - Dsui_1892 0.78 -0.2
1,993,837 + Dsui_1892 0.85 +0.2
1,993,879 + -0.2
1,993,880 - -1.6
1,993,887 - -0.1
1,993,887 - -0.3
1,994,055 + Dsui_1893 0.12 -2.1
1,994,289 - -1.2
1,994,325 + Dsui_1893 0.84 -1.0
1,994,345 - Dsui_1893 0.90 -1.4
1,994,367 + -0.3
1,994,441 + -0.6
1,994,444 - -0.4
1,994,444 - -0.4
1,994,444 - +0.3
1,994,444 - +0.2
1,994,485 - -0.5
1,994,593 + Dsui_1894 0.19 -0.3
1,994,778 + -2.5
1,994,867 - Dsui_1894 0.49 -0.2
1,994,910 - Dsui_1894 0.54 -0.1
1,994,993 + Dsui_1894 0.63 -0.3
1,995,188 - Dsui_1894 0.85 -1.0
1,995,188 - Dsui_1894 0.85 +0.4
1,995,333 - -0.4

Or see this region's nucleotide sequence