Strain Fitness in Dechlorosoma suillum PS around Dsui_1857

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1855 and Dsui_1856 are separated by 102 nucleotidesDsui_1856 and Dsui_1857 overlap by 13 nucleotidesDsui_1857 and Dsui_1858 are separated by 154 nucleotides Dsui_1855: Dsui_1855 - hypothetical protein, at 1,949,964 to 1,950,902 _1855 Dsui_1856: Dsui_1856 - 4-oxalocrotonate tautomerase family enzyme, at 1,951,005 to 1,951,214 _1856 Dsui_1857: Dsui_1857 - putative permease, DMT superfamily, at 1,951,202 to 1,952,101 _1857 Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140 _1858 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1950.342 kb on + strandat 1950.521 kb on + strandat 1950.589 kb on + strand, within Dsui_1855at 1950.590 kb on - strandat 1950.630 kb on - strandat 1950.637 kb on + strand, within Dsui_1855at 1950.675 kb on - strandat 1950.739 kb on - strandat 1950.815 kb on - strandat 1951.000 kb on - strandat 1951.074 kb on - strandat 1951.182 kb on + strand, within Dsui_1856at 1951.227 kb on - strandat 1951.368 kb on - strand, within Dsui_1857at 1951.376 kb on - strandat 1951.385 kb on + strandat 1951.440 kb on - strandat 1951.536 kb on + strandat 1951.544 kb on - strand, within Dsui_1857at 1951.572 kb on - strand, within Dsui_1857at 1951.611 kb on + strand, within Dsui_1857at 1951.845 kb on + strandat 1951.896 kb on - strandat 1952.017 kb on + strandat 1952.268 kb on + strandat 1952.342 kb on + strandat 1952.342 kb on + strandat 1952.729 kb on + strand, within Dsui_1858at 1952.737 kb on - strandat 1952.784 kb on + strand, within Dsui_1858at 1952.792 kb on - strand, within Dsui_1858at 1952.825 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1953.048 kb on - strand, within Dsui_1858

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
1,950,342 + -0.8
1,950,521 + -2.9
1,950,589 + Dsui_1855 0.67 -2.5
1,950,590 - -2.6
1,950,630 - -2.5
1,950,637 + Dsui_1855 0.72 -0.9
1,950,675 - -0.8
1,950,739 - -2.3
1,950,815 - -1.2
1,951,000 - -2.8
1,951,074 - -2.2
1,951,182 + Dsui_1856 0.84 -1.2
1,951,227 - -0.3
1,951,368 - Dsui_1857 0.18 -1.3
1,951,376 - -2.8
1,951,385 + -1.9
1,951,440 - -2.1
1,951,536 + -0.7
1,951,544 - Dsui_1857 0.38 +1.0
1,951,572 - Dsui_1857 0.41 -3.4
1,951,611 + Dsui_1857 0.45 -3.4
1,951,845 + +0.4
1,951,896 - -2.8
1,952,017 + -1.3
1,952,268 + +0.6
1,952,342 + +0.4
1,952,342 + +0.3
1,952,729 + Dsui_1858 0.53 +1.9
1,952,737 - +0.7
1,952,784 + Dsui_1858 0.60 +0.1
1,952,792 - Dsui_1858 0.61 -0.9
1,952,825 + Dsui_1858 0.64 +0.4
1,952,938 + Dsui_1858 0.77 +0.3
1,952,938 + Dsui_1858 0.77 +1.2
1,953,048 - Dsui_1858 0.89 -0.4

Or see this region's nucleotide sequence