Strain Fitness in Dechlorosoma suillum PS around Dsui_1768

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1766 and Dsui_1767 are separated by 94 nucleotidesDsui_1767 and Dsui_1768 are separated by 9 nucleotidesDsui_1768 and Dsui_1769 overlap by 4 nucleotides Dsui_1766: Dsui_1766 - hypothetical protein, at 1,853,482 to 1,853,910 _1766 Dsui_1767: Dsui_1767 - methyltransferase family protein, at 1,854,005 to 1,854,658 _1767 Dsui_1768: Dsui_1768 - WxcM-like protein, at 1,854,668 to 1,855,084 _1768 Dsui_1769: Dsui_1769 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 1,855,081 to 1,856,211 _1769 Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1853.866 kb on + strand, within Dsui_1766at 1853.928 kb on + strandat 1853.932 kb on - strandat 1853.984 kb on + strandat 1854.001 kb on + strandat 1854.001 kb on + strandat 1854.050 kb on + strandat 1854.050 kb on + strandat 1854.106 kb on + strand, within Dsui_1767at 1854.149 kb on + strand, within Dsui_1767at 1854.247 kb on + strand, within Dsui_1767at 1854.272 kb on + strand, within Dsui_1767at 1854.437 kb on + strand, within Dsui_1767at 1854.476 kb on + strand, within Dsui_1767at 1854.557 kb on + strand, within Dsui_1767at 1854.596 kb on + strandat 1854.650 kb on - strandat 1854.661 kb on - strandat 1854.670 kb on + strandat 1854.705 kb on + strandat 1854.721 kb on + strand, within Dsui_1768at 1854.735 kb on - strand, within Dsui_1768at 1854.818 kb on + strand, within Dsui_1768at 1854.836 kb on + strand, within Dsui_1768at 1854.837 kb on - strand, within Dsui_1768at 1854.842 kb on - strand, within Dsui_1768at 1854.891 kb on + strand, within Dsui_1768at 1854.941 kb on - strand, within Dsui_1768at 1854.989 kb on + strand, within Dsui_1768at 1854.998 kb on + strand, within Dsui_1768at 1855.006 kb on - strand, within Dsui_1768at 1855.016 kb on - strandat 1855.056 kb on + strandat 1855.059 kb on - strandat 1855.064 kb on + strandat 1855.141 kb on + strandat 1855.167 kb on - strandat 1855.169 kb on + strandat 1855.188 kb on + strandat 1855.238 kb on + strand, within Dsui_1769at 1855.238 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.243 kb on + strand, within Dsui_1769at 1855.246 kb on - strand, within Dsui_1769at 1855.246 kb on - strand, within Dsui_1769at 1855.383 kb on + strand, within Dsui_1769at 1855.739 kb on + strand, within Dsui_1769at 1855.786 kb on + strand, within Dsui_1769at 1855.797 kb on + strand, within Dsui_1769at 1855.820 kb on + strand, within Dsui_1769at 1855.828 kb on - strand, within Dsui_1769at 1855.926 kb on + strand, within Dsui_1769at 1855.934 kb on - strand, within Dsui_1769

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,853,866 + Dsui_1766 0.90 +0.8
1,853,928 + -0.9
1,853,932 - -3.7
1,853,984 + +0.2
1,854,001 + +0.5
1,854,001 + +1.6
1,854,050 + +1.3
1,854,050 + +1.4
1,854,106 + Dsui_1767 0.15 -0.3
1,854,149 + Dsui_1767 0.22 +0.2
1,854,247 + Dsui_1767 0.37 +1.0
1,854,272 + Dsui_1767 0.41 +0.3
1,854,437 + Dsui_1767 0.66 -0.0
1,854,476 + Dsui_1767 0.72 +0.8
1,854,557 + Dsui_1767 0.84 +2.4
1,854,596 + +0.6
1,854,650 - +1.6
1,854,661 - -1.1
1,854,670 + -0.3
1,854,705 + +0.2
1,854,721 + Dsui_1768 0.13 +2.0
1,854,735 - Dsui_1768 0.16 -1.2
1,854,818 + Dsui_1768 0.36 +1.5
1,854,836 + Dsui_1768 0.40 +0.9
1,854,837 - Dsui_1768 0.41 +2.3
1,854,842 - Dsui_1768 0.42 -3.1
1,854,891 + Dsui_1768 0.53 +0.3
1,854,941 - Dsui_1768 0.65 -0.0
1,854,989 + Dsui_1768 0.77 +1.3
1,854,998 + Dsui_1768 0.79 +2.7
1,855,006 - Dsui_1768 0.81 -2.8
1,855,016 - -1.8
1,855,056 + +1.3
1,855,059 - -0.5
1,855,064 + +0.2
1,855,141 + +0.8
1,855,167 - -1.1
1,855,169 + +1.0
1,855,188 + +0.2
1,855,238 + Dsui_1769 0.14 -0.1
1,855,238 + Dsui_1769 0.14 +0.4
1,855,243 + Dsui_1769 0.14 +1.2
1,855,243 + Dsui_1769 0.14 +1.1
1,855,243 + Dsui_1769 0.14 +1.3
1,855,246 - Dsui_1769 0.15 -3.5
1,855,246 - Dsui_1769 0.15 -2.2
1,855,383 + Dsui_1769 0.27 +0.1
1,855,739 + Dsui_1769 0.58 +0.6
1,855,786 + Dsui_1769 0.62 +1.2
1,855,797 + Dsui_1769 0.63 +0.8
1,855,820 + Dsui_1769 0.65 -1.6
1,855,828 - Dsui_1769 0.66 -0.3
1,855,926 + Dsui_1769 0.75 +1.1
1,855,934 - Dsui_1769 0.75 +3.1

Or see this region's nucleotide sequence