Strain Fitness in Dechlorosoma suillum PS around Dsui_1645

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1643 and Dsui_1644 are separated by 19 nucleotidesDsui_1644 and Dsui_1645 are separated by 10 nucleotidesDsui_1645 and Dsui_1646 are separated by 96 nucleotidesDsui_1646 and Dsui_1647 are separated by 151 nucleotides Dsui_1643: Dsui_1643 - uncharacterized protein involved in response to NO, at 1,725,150 to 1,726,367 _1643 Dsui_1644: Dsui_1644 - hypothetical protein, at 1,726,387 to 1,726,773 _1644 Dsui_1645: Dsui_1645 - hemerythrin HHE cation binding domain-containing protein, at 1,726,784 to 1,727,362 _1645 Dsui_1646: Dsui_1646 - cAMP-binding protein, at 1,727,459 to 1,728,205 _1646 Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754 _1647 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1725.849 kb on - strandat 1725.949 kb on + strand, within Dsui_1643at 1725.957 kb on - strand, within Dsui_1643at 1726.000 kb on + strand, within Dsui_1643at 1726.021 kb on - strandat 1726.115 kb on + strand, within Dsui_1643at 1726.188 kb on - strand, within Dsui_1643at 1726.279 kb on + strandat 1726.372 kb on + strandat 1726.446 kb on + strand, within Dsui_1644at 1726.547 kb on - strand, within Dsui_1644at 1726.598 kb on - strand, within Dsui_1644at 1726.609 kb on + strand, within Dsui_1644at 1726.665 kb on + strand, within Dsui_1644at 1726.699 kb on + strand, within Dsui_1644at 1726.740 kb on - strandat 1726.796 kb on - strandat 1726.898 kb on - strand, within Dsui_1645at 1726.946 kb on - strand, within Dsui_1645at 1727.089 kb on + strand, within Dsui_1645at 1727.114 kb on + strand, within Dsui_1645at 1727.151 kb on - strand, within Dsui_1645at 1727.186 kb on + strand, within Dsui_1645at 1727.357 kb on + strandat 1727.357 kb on + strandat 1727.357 kb on + strandat 1727.374 kb on + strandat 1727.374 kb on + strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.382 kb on - strandat 1727.387 kb on - strandat 1727.419 kb on + strandat 1727.422 kb on + strandat 1727.467 kb on + strandat 1727.467 kb on + strandat 1727.471 kb on - strandat 1727.475 kb on + strandat 1727.619 kb on + strandat 1727.629 kb on + strand, within Dsui_1646at 1727.726 kb on - strand, within Dsui_1646at 1727.737 kb on - strand, within Dsui_1646at 1727.924 kb on - strand, within Dsui_1646at 1727.981 kb on - strand, within Dsui_1646at 1728.005 kb on - strand, within Dsui_1646at 1728.027 kb on + strand, within Dsui_1646at 1728.096 kb on + strand, within Dsui_1646at 1728.228 kb on - strandat 1728.235 kb on + strandat 1728.239 kb on + strandat 1728.271 kb on + strandat 1728.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,725,849 - -1.9
1,725,949 + Dsui_1643 0.66 +0.9
1,725,957 - Dsui_1643 0.66 +1.3
1,726,000 + Dsui_1643 0.70 +0.6
1,726,021 - +0.0
1,726,115 + Dsui_1643 0.79 +0.1
1,726,188 - Dsui_1643 0.85 -0.5
1,726,279 + +0.7
1,726,372 + +0.1
1,726,446 + Dsui_1644 0.15 -0.8
1,726,547 - Dsui_1644 0.41 -1.4
1,726,598 - Dsui_1644 0.55 +0.1
1,726,609 + Dsui_1644 0.57 -0.3
1,726,665 + Dsui_1644 0.72 +0.6
1,726,699 + Dsui_1644 0.81 +0.5
1,726,740 - -1.3
1,726,796 - -2.6
1,726,898 - Dsui_1645 0.20 -0.5
1,726,946 - Dsui_1645 0.28 -1.0
1,727,089 + Dsui_1645 0.53 -0.1
1,727,114 + Dsui_1645 0.57 -0.1
1,727,151 - Dsui_1645 0.63 -1.7
1,727,186 + Dsui_1645 0.69 +0.1
1,727,357 + +0.7
1,727,357 + +1.4
1,727,357 + +0.4
1,727,374 + +0.3
1,727,374 + -1.6
1,727,382 - -2.3
1,727,382 - -0.3
1,727,382 - -0.4
1,727,382 - +0.9
1,727,382 - -0.2
1,727,382 - -1.7
1,727,387 - -0.3
1,727,419 + +0.1
1,727,422 + -0.0
1,727,467 + -1.9
1,727,467 + -2.8
1,727,471 - -1.1
1,727,475 + -3.6
1,727,619 + -3.0
1,727,629 + Dsui_1646 0.23 -3.9
1,727,726 - Dsui_1646 0.36 -2.7
1,727,737 - Dsui_1646 0.37 -3.0
1,727,924 - Dsui_1646 0.62 -3.0
1,727,981 - Dsui_1646 0.70 -1.8
1,728,005 - Dsui_1646 0.73 -2.7
1,728,027 + Dsui_1646 0.76 -4.4
1,728,096 + Dsui_1646 0.85 -3.1
1,728,228 - -0.1
1,728,235 + -3.9
1,728,239 + -0.7
1,728,271 + -2.6
1,728,322 + -2.0

Or see this region's nucleotide sequence