Strain Fitness in Dechlorosoma suillum PS around Dsui_1537

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1534 and Dsui_1535 are separated by 30 nucleotidesDsui_1535 and Dsui_1536 are separated by 116 nucleotidesDsui_1536 and Dsui_1537 are separated by 120 nucleotidesDsui_1537 and Dsui_1538 are separated by 47 nucleotides Dsui_1534: Dsui_1534 - ribosomal protein L33, at 1,596,843 to 1,596,998 _1534 Dsui_1535: Dsui_1535 - ribosomal protein L28, at 1,597,029 to 1,597,262 _1535 Dsui_1536: Dsui_1536 - PilZ domain-containing protein, at 1,597,379 to 1,597,705 _1536 Dsui_1537: Dsui_1537 - DNA repair protein radc, at 1,597,826 to 1,598,503 _1537 Dsui_1538: Dsui_1538 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, at 1,598,551 to 1,599,735 _1538 Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -3 -2 -1 0 1at 1596.838 kb on - strandat 1596.936 kb on - strand, within Dsui_1534at 1597.013 kb on - strandat 1597.384 kb on - strandat 1597.384 kb on - strandat 1597.436 kb on - strand, within Dsui_1536at 1597.443 kb on - strand, within Dsui_1536at 1597.447 kb on - strand, within Dsui_1536at 1597.497 kb on + strand, within Dsui_1536at 1597.520 kb on - strand, within Dsui_1536at 1597.597 kb on + strand, within Dsui_1536at 1597.597 kb on + strandat 1597.597 kb on + strand, within Dsui_1536at 1597.604 kb on + strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.773 kb on + strandat 1597.788 kb on + strandat 1597.788 kb on + strandat 1597.796 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.827 kb on - strandat 1597.827 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.837 kb on - strandat 1597.911 kb on - strand, within Dsui_1537at 1597.917 kb on - strandat 1597.927 kb on + strandat 1597.969 kb on + strandat 1598.214 kb on + strand, within Dsui_1537at 1598.253 kb on + strand, within Dsui_1537at 1598.261 kb on - strand, within Dsui_1537at 1598.277 kb on - strand, within Dsui_1537at 1598.337 kb on - strand, within Dsui_1537at 1598.377 kb on + strandat 1598.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,596,838 - +1.2
1,596,936 - Dsui_1534 0.60 -0.7
1,597,013 - +0.2
1,597,384 - +1.2
1,597,384 - +1.3
1,597,436 - Dsui_1536 0.17 +1.0
1,597,443 - Dsui_1536 0.20 +0.9
1,597,447 - Dsui_1536 0.21 +0.8
1,597,497 + Dsui_1536 0.36 +0.1
1,597,520 - Dsui_1536 0.43 +1.6
1,597,597 + Dsui_1536 0.67 -2.6
1,597,597 + -3.7
1,597,597 + Dsui_1536 0.67 -0.9
1,597,604 + Dsui_1536 0.69 -0.9
1,597,605 - Dsui_1536 0.69 +0.5
1,597,605 - Dsui_1536 0.69 -0.2
1,597,605 - Dsui_1536 0.69 +0.3
1,597,605 - Dsui_1536 0.69 +0.3
1,597,605 - Dsui_1536 0.69 -0.2
1,597,773 + +0.0
1,597,788 + -2.2
1,597,788 + +0.0
1,597,796 - +1.7
1,597,798 - -2.6
1,597,798 - -0.2
1,597,798 - -1.3
1,597,824 + +1.1
1,597,824 + -0.3
1,597,824 + +0.3
1,597,824 + -2.1
1,597,824 + -3.6
1,597,824 + -1.8
1,597,827 - -1.7
1,597,827 - +0.1
1,597,832 - -2.4
1,597,832 - -0.8
1,597,832 - -1.7
1,597,837 - +0.0
1,597,911 - Dsui_1537 0.13 -1.2
1,597,917 - +0.1
1,597,927 + -0.1
1,597,969 + +1.1
1,598,214 + Dsui_1537 0.57 -1.3
1,598,253 + Dsui_1537 0.63 -1.8
1,598,261 - Dsui_1537 0.64 -1.7
1,598,277 - Dsui_1537 0.67 -1.5
1,598,337 - Dsui_1537 0.75 -2.8
1,598,377 + +0.9
1,598,511 + +0.7

Or see this region's nucleotide sequence