Strain Fitness in Dechlorosoma suillum PS around Dsui_1533

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1532 and Dsui_1533 are separated by 76 nucleotidesDsui_1533 and Dsui_1534 are separated by 376 nucleotidesDsui_1534 and Dsui_1535 are separated by 30 nucleotidesDsui_1535 and Dsui_1536 are separated by 116 nucleotides Dsui_1532: Dsui_1532 - fatty-acid desaturase, at 1,594,684 to 1,595,898 _1532 Dsui_1533: Dsui_1533 - disulfide bond formation protein DsbB, at 1,595,975 to 1,596,466 _1533 Dsui_1534: Dsui_1534 - ribosomal protein L33, at 1,596,843 to 1,596,998 _1534 Dsui_1535: Dsui_1535 - ribosomal protein L28, at 1,597,029 to 1,597,262 _1535 Dsui_1536: Dsui_1536 - PilZ domain-containing protein, at 1,597,379 to 1,597,705 _1536 Position (kb) 1595 1596 1597Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1594.983 kb on + strand, within Dsui_1532at 1594.983 kb on + strand, within Dsui_1532at 1595.033 kb on - strand, within Dsui_1532at 1595.191 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.258 kb on - strand, within Dsui_1532at 1595.294 kb on + strand, within Dsui_1532at 1595.332 kb on - strand, within Dsui_1532at 1595.392 kb on - strand, within Dsui_1532at 1595.429 kb on + strand, within Dsui_1532at 1595.442 kb on - strand, within Dsui_1532at 1595.501 kb on + strand, within Dsui_1532at 1595.579 kb on + strand, within Dsui_1532at 1595.592 kb on + strand, within Dsui_1532at 1595.757 kb on + strand, within Dsui_1532at 1595.775 kb on - strand, within Dsui_1532at 1595.796 kb on - strandat 1595.921 kb on - strandat 1595.953 kb on + strandat 1596.046 kb on - strand, within Dsui_1533at 1596.056 kb on - strandat 1596.153 kb on - strandat 1596.183 kb on - strand, within Dsui_1533at 1596.224 kb on + strand, within Dsui_1533at 1596.237 kb on - strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.271 kb on - strandat 1596.370 kb on + strand, within Dsui_1533at 1596.373 kb on - strand, within Dsui_1533at 1596.379 kb on - strandat 1596.525 kb on + strandat 1596.530 kb on + strandat 1596.838 kb on - strandat 1596.936 kb on - strand, within Dsui_1534at 1597.013 kb on - strandat 1597.384 kb on - strandat 1597.384 kb on - strandat 1597.436 kb on - strand, within Dsui_1536at 1597.443 kb on - strand, within Dsui_1536at 1597.447 kb on - strand, within Dsui_1536

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,594,983 + Dsui_1532 0.25 -0.0
1,594,983 + Dsui_1532 0.25 +0.2
1,595,033 - Dsui_1532 0.29 -0.2
1,595,191 + Dsui_1532 0.42 +0.5
1,595,250 + Dsui_1532 0.47 -0.1
1,595,250 + Dsui_1532 0.47 +0.4
1,595,258 - Dsui_1532 0.47 -0.5
1,595,294 + Dsui_1532 0.50 -0.2
1,595,332 - Dsui_1532 0.53 -0.5
1,595,392 - Dsui_1532 0.58 -0.4
1,595,429 + Dsui_1532 0.61 +0.2
1,595,442 - Dsui_1532 0.62 -1.3
1,595,501 + Dsui_1532 0.67 -2.3
1,595,579 + Dsui_1532 0.74 +0.2
1,595,592 + Dsui_1532 0.75 +0.1
1,595,757 + Dsui_1532 0.88 +0.7
1,595,775 - Dsui_1532 0.90 -0.3
1,595,796 - -0.2
1,595,921 - -1.0
1,595,953 + +0.2
1,596,046 - Dsui_1533 0.14 -2.7
1,596,056 - -0.8
1,596,153 - -2.9
1,596,183 - Dsui_1533 0.42 -1.6
1,596,224 + Dsui_1533 0.51 -2.2
1,596,237 - Dsui_1533 0.53 -3.9
1,596,263 + Dsui_1533 0.59 -2.2
1,596,263 + Dsui_1533 0.59 -4.8
1,596,271 - -0.8
1,596,370 + Dsui_1533 0.80 -3.6
1,596,373 - Dsui_1533 0.81 -2.6
1,596,379 - -3.0
1,596,525 + -0.2
1,596,530 + -1.7
1,596,838 - +1.2
1,596,936 - Dsui_1534 0.60 -0.7
1,597,013 - +0.2
1,597,384 - +1.2
1,597,384 - +1.3
1,597,436 - Dsui_1536 0.17 +1.0
1,597,443 - Dsui_1536 0.20 +0.9
1,597,447 - Dsui_1536 0.21 +0.8

Or see this region's nucleotide sequence