Strain Fitness in Dechlorosoma suillum PS around Dsui_1504

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1502 and Dsui_1503 overlap by 23 nucleotidesDsui_1503 and Dsui_1504 are separated by 24 nucleotidesDsui_1504 and Dsui_1505 are separated by 18 nucleotidesDsui_1505 and Dsui_1507 are separated by 308 nucleotides Dsui_1502: Dsui_1502 - putative membrane protein, at 1,567,707 to 1,568,207 _1502 Dsui_1503: Dsui_1503 - Zn-dependent protease with chaperone function, at 1,568,185 to 1,569,150 _1503 Dsui_1504: Dsui_1504 - trypsin-like serine protease with C-terminal PDZ domain, at 1,569,175 to 1,570,326 _1504 Dsui_1505: Dsui_1505 - phage-related lysozyme (muraminidase), at 1,570,345 to 1,570,809 _1505 Dsui_1507: Dsui_1507 - transposase, at 1,571,118 to 1,572,608 _1507 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -1 0 1 2 3at 1568.411 kb on + strand, within Dsui_1503at 1568.524 kb on - strand, within Dsui_1503at 1568.579 kb on - strand, within Dsui_1503at 1568.699 kb on - strand, within Dsui_1503at 1568.757 kb on - strand, within Dsui_1503at 1568.908 kb on - strand, within Dsui_1503at 1568.965 kb on + strand, within Dsui_1503at 1569.165 kb on - strandat 1569.171 kb on + strandat 1569.177 kb on + strandat 1569.182 kb on + strandat 1569.182 kb on + strandat 1569.182 kb on + strandat 1569.183 kb on + strandat 1569.223 kb on - strandat 1569.371 kb on + strand, within Dsui_1504at 1569.371 kb on + strand, within Dsui_1504at 1569.371 kb on + strand, within Dsui_1504at 1569.379 kb on - strand, within Dsui_1504at 1569.413 kb on - strand, within Dsui_1504at 1569.554 kb on + strand, within Dsui_1504at 1569.587 kb on - strand, within Dsui_1504at 1569.594 kb on + strand, within Dsui_1504at 1569.602 kb on - strand, within Dsui_1504at 1569.723 kb on + strand, within Dsui_1504at 1569.725 kb on + strand, within Dsui_1504at 1569.862 kb on + strand, within Dsui_1504at 1570.030 kb on - strand, within Dsui_1504at 1570.075 kb on - strand, within Dsui_1504at 1570.245 kb on + strandat 1570.580 kb on - strand, within Dsui_1505at 1570.733 kb on + strand, within Dsui_1505at 1570.890 kb on + strandat 1570.968 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,568,411 + Dsui_1503 0.23 +1.1
1,568,524 - Dsui_1503 0.35 +1.9
1,568,579 - Dsui_1503 0.41 -0.2
1,568,699 - Dsui_1503 0.53 +1.1
1,568,757 - Dsui_1503 0.59 +0.1
1,568,908 - Dsui_1503 0.75 +0.1
1,568,965 + Dsui_1503 0.81 +0.9
1,569,165 - -1.5
1,569,171 + +0.4
1,569,177 + +1.4
1,569,182 + +0.7
1,569,182 + +0.9
1,569,182 + +0.8
1,569,183 + +0.7
1,569,223 - -0.1
1,569,371 + Dsui_1504 0.17 +0.3
1,569,371 + Dsui_1504 0.17 +1.3
1,569,371 + Dsui_1504 0.17 +0.4
1,569,379 - Dsui_1504 0.18 +0.7
1,569,413 - Dsui_1504 0.21 +0.3
1,569,554 + Dsui_1504 0.33 +1.1
1,569,587 - Dsui_1504 0.36 -0.3
1,569,594 + Dsui_1504 0.36 +1.1
1,569,602 - Dsui_1504 0.37 +1.4
1,569,723 + Dsui_1504 0.48 +1.0
1,569,725 + Dsui_1504 0.48 +1.6
1,569,862 + Dsui_1504 0.60 +0.2
1,570,030 - Dsui_1504 0.74 +0.6
1,570,075 - Dsui_1504 0.78 +0.5
1,570,245 + -1.0
1,570,580 - Dsui_1505 0.51 -0.2
1,570,733 + Dsui_1505 0.83 +0.5
1,570,890 + +0.2
1,570,968 - +0.7
1,571,009 - +0.6
1,571,009 - +2.0
1,571,009 - +3.1
1,571,009 - +0.2

Or see this region's nucleotide sequence