Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1499 and Dsui_1500 overlap by 11 nucleotides Dsui_1500 and Dsui_1501 are separated by 154 nucleotides Dsui_1501 and Dsui_1502 are separated by 183 nucleotides Dsui_1502 and Dsui_1503 overlap by 23 nucleotides
Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131
_1499
Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561
_1500
Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523
_1501
Dsui_1502: Dsui_1502 - putative membrane protein, at 1,567,707 to 1,568,207
_1502
Dsui_1503: Dsui_1503 - Zn-dependent protease with chaperone function, at 1,568,185 to 1,569,150
_1503
Position (kb)
1564
1565
1566
1567
1568 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1563.799 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.961 kb on + strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.969 kb on - strand, within Dsui_1499 at 1563.979 kb on - strand, within Dsui_1499 at 1563.981 kb on + strand, within Dsui_1499 at 1564.044 kb on + strand at 1564.103 kb on + strand at 1564.111 kb on - strand at 1564.236 kb on - strand, within Dsui_1500 at 1564.390 kb on - strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.402 kb on + strand, within Dsui_1500 at 1564.419 kb on + strand, within Dsui_1500 at 1564.496 kb on + strand, within Dsui_1500 at 1564.697 kb on + strand at 1564.697 kb on + strand at 1564.705 kb on - strand at 1564.728 kb on + strand at 1564.736 kb on - strand at 1564.736 kb on - strand at 1564.740 kb on + strand at 1564.748 kb on - strand at 1564.809 kb on + strand at 1564.817 kb on - strand at 1564.817 kb on - strand at 1564.846 kb on + strand at 1564.854 kb on - strand at 1564.897 kb on + strand at 1564.914 kb on + strand at 1564.922 kb on - strand at 1565.069 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.199 kb on + strand, within Dsui_1501 at 1565.233 kb on + strand, within Dsui_1501 at 1565.238 kb on + strand, within Dsui_1501 at 1565.243 kb on + strand, within Dsui_1501 at 1565.259 kb on + strand, within Dsui_1501 at 1565.295 kb on - strand, within Dsui_1501 at 1565.426 kb on - strand, within Dsui_1501 at 1565.452 kb on + strand, within Dsui_1501 at 1565.487 kb on - strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.529 kb on + strand, within Dsui_1501 at 1565.532 kb on - strand, within Dsui_1501 at 1565.560 kb on + strand, within Dsui_1501 at 1565.568 kb on + strand, within Dsui_1501 at 1565.632 kb on + strand, within Dsui_1501 at 1565.776 kb on + strand, within Dsui_1501 at 1565.776 kb on + strand, within Dsui_1501 at 1565.784 kb on - strand, within Dsui_1501 at 1565.800 kb on + strand, within Dsui_1501 at 1565.840 kb on + strand, within Dsui_1501 at 1565.861 kb on - strand, within Dsui_1501 at 1565.877 kb on + strand, within Dsui_1501 at 1565.885 kb on - strand, within Dsui_1501 at 1565.934 kb on - strand, within Dsui_1501 at 1566.025 kb on + strand, within Dsui_1501 at 1566.067 kb on - strand, within Dsui_1501 at 1566.257 kb on - strand, within Dsui_1501 at 1566.309 kb on + strand, within Dsui_1501 at 1566.386 kb on + strand, within Dsui_1501 at 1566.402 kb on + strand, within Dsui_1501 at 1566.485 kb on + strand, within Dsui_1501 at 1566.501 kb on + strand, within Dsui_1501 at 1566.558 kb on - strand, within Dsui_1501 at 1566.583 kb on + strand, within Dsui_1501 at 1566.624 kb on - strand, within Dsui_1501 at 1566.686 kb on + strand, within Dsui_1501 at 1566.800 kb on - strand, within Dsui_1501 at 1567.097 kb on - strand, within Dsui_1501 at 1567.102 kb on - strand, within Dsui_1501 at 1567.169 kb on - strand, within Dsui_1501 at 1567.193 kb on - strand, within Dsui_1501 at 1567.302 kb on + strand at 1567.302 kb on + strand at 1567.405 kb on + strand at 1567.450 kb on - strand at 1567.535 kb on + strand at 1567.542 kb on + strand at 1567.560 kb on - strand at 1567.802 kb on - strand, within Dsui_1502 at 1567.816 kb on - strand, within Dsui_1502 at 1567.885 kb on - strand, within Dsui_1502 at 1567.895 kb on - strand, within Dsui_1502 at 1567.994 kb on - strand, within Dsui_1502 at 1568.002 kb on + strand, within Dsui_1502 at 1568.012 kb on + strand, within Dsui_1502 at 1568.020 kb on + strand, within Dsui_1502 at 1568.020 kb on - strand, within Dsui_1502 at 1568.033 kb on - strand, within Dsui_1502 at 1568.079 kb on - strand, within Dsui_1502 at 1568.411 kb on + strand, within Dsui_1503
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 1,563,799 + Dsui_1499 0.71 +1.5 1,563,961 + Dsui_1499 0.85 +0.9 1,563,961 + Dsui_1499 0.85 +1.1 1,563,961 + Dsui_1499 0.85 +1.4 1,563,961 + Dsui_1499 0.85 +1.3 1,563,969 - Dsui_1499 0.86 -2.2 1,563,969 - Dsui_1499 0.86 +0.8 1,563,979 - Dsui_1499 0.87 +0.5 1,563,981 + Dsui_1499 0.87 +1.1 1,564,044 + +1.6 1,564,103 + +0.9 1,564,111 - +0.9 1,564,236 - Dsui_1500 0.26 -1.1 1,564,390 - Dsui_1500 0.61 +0.5 1,564,402 + Dsui_1500 0.64 +1.6 1,564,402 + Dsui_1500 0.64 +0.9 1,564,419 + Dsui_1500 0.68 +0.5 1,564,496 + Dsui_1500 0.85 +1.2 1,564,697 + +0.6 1,564,697 + +0.6 1,564,705 - +0.5 1,564,728 + +0.4 1,564,736 - +1.0 1,564,736 - +0.3 1,564,740 + +1.0 1,564,748 - +0.5 1,564,809 + +0.0 1,564,817 - +1.0 1,564,817 - +1.5 1,564,846 + +0.3 1,564,854 - +0.5 1,564,897 + +0.9 1,564,914 + -1.1 1,564,922 - +1.4 1,565,069 + Dsui_1501 0.13 +3.0 1,565,199 + Dsui_1501 0.17 +0.3 1,565,199 + Dsui_1501 0.17 +0.8 1,565,233 + Dsui_1501 0.18 +0.7 1,565,238 + Dsui_1501 0.19 +2.5 1,565,243 + Dsui_1501 0.19 +1.1 1,565,259 + Dsui_1501 0.19 +1.2 1,565,295 - Dsui_1501 0.21 +0.7 1,565,426 - Dsui_1501 0.25 +1.0 1,565,452 + Dsui_1501 0.26 -0.1 1,565,487 - Dsui_1501 0.27 +0.2 1,565,529 + Dsui_1501 0.29 -0.2 1,565,529 + Dsui_1501 0.29 +1.2 1,565,532 - Dsui_1501 0.29 +1.0 1,565,560 + Dsui_1501 0.30 +1.7 1,565,568 + Dsui_1501 0.30 +1.0 1,565,632 + Dsui_1501 0.33 -0.4 1,565,776 + Dsui_1501 0.38 +0.6 1,565,776 + Dsui_1501 0.38 +0.7 1,565,784 - Dsui_1501 0.38 -0.1 1,565,800 + Dsui_1501 0.39 +1.2 1,565,840 + Dsui_1501 0.40 +0.1 1,565,861 - Dsui_1501 0.41 +1.4 1,565,877 + Dsui_1501 0.41 +2.1 1,565,885 - Dsui_1501 0.42 +0.2 1,565,934 - Dsui_1501 0.43 +0.9 1,566,025 + Dsui_1501 0.47 +0.8 1,566,067 - Dsui_1501 0.48 +0.6 1,566,257 - Dsui_1501 0.55 +0.7 1,566,309 + Dsui_1501 0.57 +0.1 1,566,386 + Dsui_1501 0.59 -0.2 1,566,402 + Dsui_1501 0.60 -0.1 1,566,485 + Dsui_1501 0.63 +1.2 1,566,501 + Dsui_1501 0.64 +1.4 1,566,558 - Dsui_1501 0.66 +0.6 1,566,583 + Dsui_1501 0.66 +0.8 1,566,624 - Dsui_1501 0.68 +1.2 1,566,686 + Dsui_1501 0.70 +1.6 1,566,800 - Dsui_1501 0.74 -0.1 1,567,097 - Dsui_1501 0.85 +0.6 1,567,102 - Dsui_1501 0.85 +0.5 1,567,169 - Dsui_1501 0.87 +1.0 1,567,193 - Dsui_1501 0.88 +1.2 1,567,302 + +0.0 1,567,302 + -1.7 1,567,405 + +1.1 1,567,450 - +0.6 1,567,535 + +1.0 1,567,542 + +0.7 1,567,560 - +0.0 1,567,802 - Dsui_1502 0.19 +1.4 1,567,816 - Dsui_1502 0.22 +1.5 1,567,885 - Dsui_1502 0.36 +0.2 1,567,895 - Dsui_1502 0.38 -1.0 1,567,994 - Dsui_1502 0.57 +0.7 1,568,002 + Dsui_1502 0.59 +0.8 1,568,012 + Dsui_1502 0.61 +0.5 1,568,020 + Dsui_1502 0.62 +0.1 1,568,020 - Dsui_1502 0.62 +0.6 1,568,033 - Dsui_1502 0.65 +0.9 1,568,079 - Dsui_1502 0.74 +1.2 1,568,411 + Dsui_1503 0.23 +1.1
Or see this region's nucleotide sequence