Strain Fitness in Dechlorosoma suillum PS around Dsui_1501

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1499 and Dsui_1500 overlap by 11 nucleotidesDsui_1500 and Dsui_1501 are separated by 154 nucleotidesDsui_1501 and Dsui_1502 are separated by 183 nucleotidesDsui_1502 and Dsui_1503 overlap by 23 nucleotides Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131 _1499 Dsui_1500: Dsui_1500 - thioredoxin, at 1,564,121 to 1,564,561 _1500 Dsui_1501: Dsui_1501 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,564,716 to 1,567,523 _1501 Dsui_1502: Dsui_1502 - putative membrane protein, at 1,567,707 to 1,568,207 _1502 Dsui_1503: Dsui_1503 - Zn-dependent protease with chaperone function, at 1,568,185 to 1,569,150 _1503 Position (kb) 1564 1565 1566 1567 1568Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1563.799 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.961 kb on + strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.969 kb on - strand, within Dsui_1499at 1563.979 kb on - strand, within Dsui_1499at 1563.981 kb on + strand, within Dsui_1499at 1564.044 kb on + strandat 1564.103 kb on + strandat 1564.111 kb on - strandat 1564.236 kb on - strand, within Dsui_1500at 1564.390 kb on - strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.402 kb on + strand, within Dsui_1500at 1564.419 kb on + strand, within Dsui_1500at 1564.496 kb on + strand, within Dsui_1500at 1564.697 kb on + strandat 1564.697 kb on + strandat 1564.705 kb on - strandat 1564.728 kb on + strandat 1564.736 kb on - strandat 1564.736 kb on - strandat 1564.740 kb on + strandat 1564.748 kb on - strandat 1564.809 kb on + strandat 1564.817 kb on - strandat 1564.817 kb on - strandat 1564.846 kb on + strandat 1564.854 kb on - strandat 1564.897 kb on + strandat 1564.914 kb on + strandat 1564.922 kb on - strandat 1565.069 kb on + strand, within Dsui_1501at 1565.199 kb on + strand, within Dsui_1501at 1565.199 kb on + strand, within Dsui_1501at 1565.233 kb on + strand, within Dsui_1501at 1565.238 kb on + strand, within Dsui_1501at 1565.243 kb on + strand, within Dsui_1501at 1565.259 kb on + strand, within Dsui_1501at 1565.295 kb on - strand, within Dsui_1501at 1565.426 kb on - strand, within Dsui_1501at 1565.452 kb on + strand, within Dsui_1501at 1565.487 kb on - strand, within Dsui_1501at 1565.529 kb on + strand, within Dsui_1501at 1565.529 kb on + strand, within Dsui_1501at 1565.532 kb on - strand, within Dsui_1501at 1565.560 kb on + strand, within Dsui_1501at 1565.568 kb on + strand, within Dsui_1501at 1565.632 kb on + strand, within Dsui_1501at 1565.776 kb on + strand, within Dsui_1501at 1565.776 kb on + strand, within Dsui_1501at 1565.784 kb on - strand, within Dsui_1501at 1565.800 kb on + strand, within Dsui_1501at 1565.840 kb on + strand, within Dsui_1501at 1565.861 kb on - strand, within Dsui_1501at 1565.877 kb on + strand, within Dsui_1501at 1565.885 kb on - strand, within Dsui_1501at 1565.934 kb on - strand, within Dsui_1501at 1566.025 kb on + strand, within Dsui_1501at 1566.067 kb on - strand, within Dsui_1501at 1566.257 kb on - strand, within Dsui_1501at 1566.309 kb on + strand, within Dsui_1501at 1566.386 kb on + strand, within Dsui_1501at 1566.402 kb on + strand, within Dsui_1501at 1566.485 kb on + strand, within Dsui_1501at 1566.501 kb on + strand, within Dsui_1501at 1566.558 kb on - strand, within Dsui_1501at 1566.583 kb on + strand, within Dsui_1501at 1566.624 kb on - strand, within Dsui_1501at 1566.686 kb on + strand, within Dsui_1501at 1566.800 kb on - strand, within Dsui_1501at 1567.097 kb on - strand, within Dsui_1501at 1567.102 kb on - strand, within Dsui_1501at 1567.169 kb on - strand, within Dsui_1501at 1567.193 kb on - strand, within Dsui_1501at 1567.302 kb on + strandat 1567.302 kb on + strandat 1567.405 kb on + strandat 1567.450 kb on - strandat 1567.535 kb on + strandat 1567.542 kb on + strandat 1567.560 kb on - strandat 1567.802 kb on - strand, within Dsui_1502at 1567.816 kb on - strand, within Dsui_1502at 1567.885 kb on - strand, within Dsui_1502at 1567.895 kb on - strand, within Dsui_1502at 1567.994 kb on - strand, within Dsui_1502at 1568.002 kb on + strand, within Dsui_1502at 1568.012 kb on + strand, within Dsui_1502at 1568.020 kb on + strand, within Dsui_1502at 1568.020 kb on - strand, within Dsui_1502at 1568.033 kb on - strand, within Dsui_1502at 1568.079 kb on - strand, within Dsui_1502at 1568.411 kb on + strand, within Dsui_1503

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,563,799 + Dsui_1499 0.71 +1.5
1,563,961 + Dsui_1499 0.85 +0.9
1,563,961 + Dsui_1499 0.85 +1.1
1,563,961 + Dsui_1499 0.85 +1.4
1,563,961 + Dsui_1499 0.85 +1.3
1,563,969 - Dsui_1499 0.86 -2.2
1,563,969 - Dsui_1499 0.86 +0.8
1,563,979 - Dsui_1499 0.87 +0.5
1,563,981 + Dsui_1499 0.87 +1.1
1,564,044 + +1.6
1,564,103 + +0.9
1,564,111 - +0.9
1,564,236 - Dsui_1500 0.26 -1.1
1,564,390 - Dsui_1500 0.61 +0.5
1,564,402 + Dsui_1500 0.64 +1.6
1,564,402 + Dsui_1500 0.64 +0.9
1,564,419 + Dsui_1500 0.68 +0.5
1,564,496 + Dsui_1500 0.85 +1.2
1,564,697 + +0.6
1,564,697 + +0.6
1,564,705 - +0.5
1,564,728 + +0.4
1,564,736 - +1.0
1,564,736 - +0.3
1,564,740 + +1.0
1,564,748 - +0.5
1,564,809 + +0.0
1,564,817 - +1.0
1,564,817 - +1.5
1,564,846 + +0.3
1,564,854 - +0.5
1,564,897 + +0.9
1,564,914 + -1.1
1,564,922 - +1.4
1,565,069 + Dsui_1501 0.13 +3.0
1,565,199 + Dsui_1501 0.17 +0.3
1,565,199 + Dsui_1501 0.17 +0.8
1,565,233 + Dsui_1501 0.18 +0.7
1,565,238 + Dsui_1501 0.19 +2.5
1,565,243 + Dsui_1501 0.19 +1.1
1,565,259 + Dsui_1501 0.19 +1.2
1,565,295 - Dsui_1501 0.21 +0.7
1,565,426 - Dsui_1501 0.25 +1.0
1,565,452 + Dsui_1501 0.26 -0.1
1,565,487 - Dsui_1501 0.27 +0.2
1,565,529 + Dsui_1501 0.29 -0.2
1,565,529 + Dsui_1501 0.29 +1.2
1,565,532 - Dsui_1501 0.29 +1.0
1,565,560 + Dsui_1501 0.30 +1.7
1,565,568 + Dsui_1501 0.30 +1.0
1,565,632 + Dsui_1501 0.33 -0.4
1,565,776 + Dsui_1501 0.38 +0.6
1,565,776 + Dsui_1501 0.38 +0.7
1,565,784 - Dsui_1501 0.38 -0.1
1,565,800 + Dsui_1501 0.39 +1.2
1,565,840 + Dsui_1501 0.40 +0.1
1,565,861 - Dsui_1501 0.41 +1.4
1,565,877 + Dsui_1501 0.41 +2.1
1,565,885 - Dsui_1501 0.42 +0.2
1,565,934 - Dsui_1501 0.43 +0.9
1,566,025 + Dsui_1501 0.47 +0.8
1,566,067 - Dsui_1501 0.48 +0.6
1,566,257 - Dsui_1501 0.55 +0.7
1,566,309 + Dsui_1501 0.57 +0.1
1,566,386 + Dsui_1501 0.59 -0.2
1,566,402 + Dsui_1501 0.60 -0.1
1,566,485 + Dsui_1501 0.63 +1.2
1,566,501 + Dsui_1501 0.64 +1.4
1,566,558 - Dsui_1501 0.66 +0.6
1,566,583 + Dsui_1501 0.66 +0.8
1,566,624 - Dsui_1501 0.68 +1.2
1,566,686 + Dsui_1501 0.70 +1.6
1,566,800 - Dsui_1501 0.74 -0.1
1,567,097 - Dsui_1501 0.85 +0.6
1,567,102 - Dsui_1501 0.85 +0.5
1,567,169 - Dsui_1501 0.87 +1.0
1,567,193 - Dsui_1501 0.88 +1.2
1,567,302 + +0.0
1,567,302 + -1.7
1,567,405 + +1.1
1,567,450 - +0.6
1,567,535 + +1.0
1,567,542 + +0.7
1,567,560 - +0.0
1,567,802 - Dsui_1502 0.19 +1.4
1,567,816 - Dsui_1502 0.22 +1.5
1,567,885 - Dsui_1502 0.36 +0.2
1,567,895 - Dsui_1502 0.38 -1.0
1,567,994 - Dsui_1502 0.57 +0.7
1,568,002 + Dsui_1502 0.59 +0.8
1,568,012 + Dsui_1502 0.61 +0.5
1,568,020 + Dsui_1502 0.62 +0.1
1,568,020 - Dsui_1502 0.62 +0.6
1,568,033 - Dsui_1502 0.65 +0.9
1,568,079 - Dsui_1502 0.74 +1.2
1,568,411 + Dsui_1503 0.23 +1.1

Or see this region's nucleotide sequence