Strain Fitness in Dechlorosoma suillum PS around Dsui_1396

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1395 and Dsui_1396 are separated by 154 nucleotidesDsui_1396 and Dsui_1397 overlap by 11 nucleotides Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718 _1395 Dsui_1396: Dsui_1396 - type II secretory pathway, component ExeA (predicted ATPase), at 1,455,873 to 1,457,318 _1396 Dsui_1397: Dsui_1397 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,457,308 to 1,458,771 _1397 Position (kb) 1455 1456 1457 1458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1455.003 kb on + strand, within Dsui_1395at 1455.255 kb on - strand, within Dsui_1395at 1455.255 kb on - strand, within Dsui_1395at 1455.292 kb on - strand, within Dsui_1395at 1455.297 kb on - strand, within Dsui_1395at 1455.354 kb on + strand, within Dsui_1395at 1455.460 kb on - strand, within Dsui_1395at 1455.503 kb on - strand, within Dsui_1395at 1455.622 kb on + strandat 1455.622 kb on + strandat 1455.630 kb on - strandat 1455.630 kb on - strandat 1455.701 kb on + strandat 1455.706 kb on + strandat 1455.727 kb on + strandat 1455.733 kb on - strandat 1455.772 kb on + strandat 1455.898 kb on + strandat 1455.898 kb on + strandat 1456.079 kb on - strand, within Dsui_1396at 1456.160 kb on - strand, within Dsui_1396at 1456.261 kb on - strand, within Dsui_1396at 1456.670 kb on + strand, within Dsui_1396at 1456.759 kb on - strand, within Dsui_1396at 1456.799 kb on - strandat 1456.921 kb on + strandat 1456.929 kb on - strandat 1457.001 kb on - strand, within Dsui_1396at 1457.003 kb on + strandat 1457.011 kb on - strand, within Dsui_1396at 1457.011 kb on - strand, within Dsui_1396at 1457.086 kb on - strand, within Dsui_1396at 1457.144 kb on + strand, within Dsui_1396at 1457.156 kb on - strand, within Dsui_1396at 1457.306 kb on + strandat 1457.341 kb on - strandat 1457.485 kb on - strand, within Dsui_1397at 1457.501 kb on - strandat 1457.542 kb on - strand, within Dsui_1397at 1457.582 kb on + strandat 1457.584 kb on - strand, within Dsui_1397at 1457.673 kb on + strand, within Dsui_1397at 1457.713 kb on + strand, within Dsui_1397at 1457.721 kb on - strand, within Dsui_1397at 1457.791 kb on + strand, within Dsui_1397at 1457.867 kb on + strandat 1457.872 kb on + strand, within Dsui_1397at 1457.944 kb on + strand, within Dsui_1397at 1458.115 kb on - strand, within Dsui_1397at 1458.126 kb on - strand, within Dsui_1397at 1458.130 kb on - strand, within Dsui_1397at 1458.286 kb on - strand, within Dsui_1397at 1458.290 kb on + strand, within Dsui_1397at 1458.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,455,003 + Dsui_1395 0.62 -3.8
1,455,255 - Dsui_1395 0.76 -0.7
1,455,255 - Dsui_1395 0.76 +1.0
1,455,292 - Dsui_1395 0.78 -1.8
1,455,297 - Dsui_1395 0.78 +0.6
1,455,354 + Dsui_1395 0.81 -0.1
1,455,460 - Dsui_1395 0.86 -0.6
1,455,503 - Dsui_1395 0.89 +0.7
1,455,622 + -1.0
1,455,622 + -0.0
1,455,630 - +0.9
1,455,630 - +0.8
1,455,701 + -0.7
1,455,706 + -0.3
1,455,727 + +0.1
1,455,733 - +0.6
1,455,772 + -1.3
1,455,898 + -0.5
1,455,898 + -1.0
1,456,079 - Dsui_1396 0.14 +0.1
1,456,160 - Dsui_1396 0.20 +0.5
1,456,261 - Dsui_1396 0.27 -0.5
1,456,670 + Dsui_1396 0.55 -2.2
1,456,759 - Dsui_1396 0.61 -0.2
1,456,799 - -0.3
1,456,921 + +0.9
1,456,929 - -3.3
1,457,001 - Dsui_1396 0.78 +1.2
1,457,003 + +0.3
1,457,011 - Dsui_1396 0.79 -0.2
1,457,011 - Dsui_1396 0.79 +0.0
1,457,086 - Dsui_1396 0.84 +0.6
1,457,144 + Dsui_1396 0.88 +0.8
1,457,156 - Dsui_1396 0.89 -0.7
1,457,306 + +1.8
1,457,341 - +0.1
1,457,485 - Dsui_1397 0.12 -1.1
1,457,501 - +1.5
1,457,542 - Dsui_1397 0.16 +0.9
1,457,582 + -3.4
1,457,584 - Dsui_1397 0.19 +0.9
1,457,673 + Dsui_1397 0.25 +0.3
1,457,713 + Dsui_1397 0.28 -0.4
1,457,721 - Dsui_1397 0.28 +0.5
1,457,791 + Dsui_1397 0.33 -1.5
1,457,867 + -2.5
1,457,872 + Dsui_1397 0.39 -1.2
1,457,944 + Dsui_1397 0.43 -2.0
1,458,115 - Dsui_1397 0.55 +0.2
1,458,126 - Dsui_1397 0.56 +0.5
1,458,130 - Dsui_1397 0.56 +1.0
1,458,286 - Dsui_1397 0.67 -0.1
1,458,290 + Dsui_1397 0.67 -1.3
1,458,307 + +1.2

Or see this region's nucleotide sequence