Strain Fitness in Dechlorosoma suillum PS around Dsui_1364

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1361 and Dsui_1362 are separated by 1 nucleotidesDsui_1362 and Dsui_1363 are separated by 12 nucleotidesDsui_1363 and Dsui_1364 are separated by 23 nucleotidesDsui_1364 and Dsui_1365 are separated by 15 nucleotidesDsui_1365 and Dsui_1366 are separated by 36 nucleotides Dsui_1361: Dsui_1361 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,415,725 to 1,416,501 _1361 Dsui_1362: Dsui_1362 - protein of unknown function (DUF1987), at 1,416,503 to 1,416,880 _1362 Dsui_1363: Dsui_1363 - hypothetical protein, at 1,416,893 to 1,417,441 _1363 Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462 _1364 Dsui_1365: Dsui_1365 - hypothetical protein, at 1,419,478 to 1,419,693 _1365 Dsui_1366: Dsui_1366 - glutaminyl-tRNA synthetase, at 1,419,730 to 1,421,511 _1366 Position (kb) 1417 1418 1419 1420Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1416.643 kb on + strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.723 kb on + strand, within Dsui_1362at 1416.745 kb on - strand, within Dsui_1362at 1416.758 kb on + strand, within Dsui_1362at 1416.759 kb on + strand, within Dsui_1362at 1416.767 kb on - strand, within Dsui_1362at 1416.792 kb on - strand, within Dsui_1362at 1416.862 kb on - strandat 1416.873 kb on - strandat 1416.997 kb on + strand, within Dsui_1363at 1417.018 kb on - strand, within Dsui_1363at 1417.018 kb on - strand, within Dsui_1363at 1417.044 kb on - strand, within Dsui_1363at 1417.095 kb on - strand, within Dsui_1363at 1417.158 kb on - strand, within Dsui_1363at 1417.198 kb on + strand, within Dsui_1363at 1417.212 kb on - strand, within Dsui_1363at 1417.219 kb on + strand, within Dsui_1363at 1417.266 kb on - strand, within Dsui_1363at 1417.299 kb on + strand, within Dsui_1363at 1417.313 kb on + strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.403 kb on - strandat 1417.468 kb on + strandat 1417.597 kb on + strandat 1417.628 kb on + strandat 1417.636 kb on - strandat 1417.643 kb on + strandat 1417.670 kb on - strand, within Dsui_1364at 1417.677 kb on + strandat 1417.677 kb on + strand, within Dsui_1364at 1417.677 kb on + strand, within Dsui_1364at 1417.685 kb on - strand, within Dsui_1364at 1417.685 kb on - strand, within Dsui_1364at 1417.685 kb on - strand, within Dsui_1364at 1417.685 kb on - strand, within Dsui_1364at 1417.860 kb on - strand, within Dsui_1364at 1417.863 kb on + strand, within Dsui_1364at 1417.866 kb on - strand, within Dsui_1364at 1418.075 kb on + strand, within Dsui_1364at 1418.134 kb on + strand, within Dsui_1364at 1418.153 kb on + strand, within Dsui_1364at 1418.230 kb on + strand, within Dsui_1364at 1418.241 kb on + strand, within Dsui_1364at 1418.241 kb on + strand, within Dsui_1364at 1418.244 kb on - strand, within Dsui_1364at 1418.249 kb on - strand, within Dsui_1364at 1418.326 kb on - strand, within Dsui_1364at 1418.466 kb on - strand, within Dsui_1364at 1418.483 kb on + strand, within Dsui_1364at 1418.534 kb on + strand, within Dsui_1364at 1418.569 kb on - strand, within Dsui_1364at 1418.617 kb on - strand, within Dsui_1364at 1418.664 kb on + strand, within Dsui_1364at 1418.672 kb on - strand, within Dsui_1364at 1418.780 kb on - strand, within Dsui_1364at 1418.816 kb on - strand, within Dsui_1364at 1418.906 kb on + strand, within Dsui_1364at 1418.906 kb on + strandat 1418.978 kb on + strand, within Dsui_1364at 1419.049 kb on - strand, within Dsui_1364at 1419.127 kb on - strand, within Dsui_1364at 1419.159 kb on - strand, within Dsui_1364at 1419.179 kb on + strand, within Dsui_1364at 1419.289 kb on + strandat 1419.310 kb on + strandat 1419.340 kb on + strandat 1419.497 kb on - strandat 1419.605 kb on + strandat 1419.673 kb on + strandat 1419.676 kb on - strandat 1419.727 kb on + strandat 1419.751 kb on - strandat 1419.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,416,643 + Dsui_1362 0.37 -1.5
1,416,651 - Dsui_1362 0.39 +0.8
1,416,651 - Dsui_1362 0.39 -0.2
1,416,651 - Dsui_1362 0.39 +0.5
1,416,651 - Dsui_1362 0.39 -0.4
1,416,723 + Dsui_1362 0.58 -0.2
1,416,745 - Dsui_1362 0.64 +0.4
1,416,758 + Dsui_1362 0.67 -0.2
1,416,759 + Dsui_1362 0.68 +1.1
1,416,767 - Dsui_1362 0.70 -0.5
1,416,792 - Dsui_1362 0.76 -0.4
1,416,862 - +0.1
1,416,873 - -0.3
1,416,997 + Dsui_1363 0.19 +0.1
1,417,018 - Dsui_1363 0.23 -0.4
1,417,018 - Dsui_1363 0.23 +1.2
1,417,044 - Dsui_1363 0.28 +0.8
1,417,095 - Dsui_1363 0.37 +1.2
1,417,158 - Dsui_1363 0.48 +0.5
1,417,198 + Dsui_1363 0.56 -0.2
1,417,212 - Dsui_1363 0.58 +0.7
1,417,219 + Dsui_1363 0.59 +0.2
1,417,266 - Dsui_1363 0.68 +0.6
1,417,299 + Dsui_1363 0.74 -1.3
1,417,313 + Dsui_1363 0.77 -0.3
1,417,321 - Dsui_1363 0.78 +0.5
1,417,321 - Dsui_1363 0.78 +0.2
1,417,321 - Dsui_1363 0.78 +0.8
1,417,403 - +1.4
1,417,468 + +0.6
1,417,597 + -1.1
1,417,628 + -1.7
1,417,636 - -2.4
1,417,643 + -1.1
1,417,670 - Dsui_1364 0.10 -0.1
1,417,677 + -0.0
1,417,677 + Dsui_1364 0.11 -0.5
1,417,677 + Dsui_1364 0.11 +0.7
1,417,685 - Dsui_1364 0.11 -0.2
1,417,685 - Dsui_1364 0.11 +0.8
1,417,685 - Dsui_1364 0.11 +0.0
1,417,685 - Dsui_1364 0.11 +2.0
1,417,860 - Dsui_1364 0.20 +1.0
1,417,863 + Dsui_1364 0.20 -0.3
1,417,866 - Dsui_1364 0.20 +0.6
1,418,075 + Dsui_1364 0.31 -0.2
1,418,134 + Dsui_1364 0.33 -0.3
1,418,153 + Dsui_1364 0.34 -0.9
1,418,230 + Dsui_1364 0.38 -0.1
1,418,241 + Dsui_1364 0.39 -1.7
1,418,241 + Dsui_1364 0.39 -0.4
1,418,244 - Dsui_1364 0.39 -0.8
1,418,249 - Dsui_1364 0.39 +0.6
1,418,326 - Dsui_1364 0.43 -0.0
1,418,466 - Dsui_1364 0.50 -0.6
1,418,483 + Dsui_1364 0.51 -0.6
1,418,534 + Dsui_1364 0.54 +0.2
1,418,569 - Dsui_1364 0.55 +0.2
1,418,617 - Dsui_1364 0.58 +1.4
1,418,664 + Dsui_1364 0.60 -2.1
1,418,672 - Dsui_1364 0.60 -2.1
1,418,780 - Dsui_1364 0.66 +0.1
1,418,816 - Dsui_1364 0.68 -2.0
1,418,906 + Dsui_1364 0.72 -0.2
1,418,906 + -0.2
1,418,978 + Dsui_1364 0.76 -0.0
1,419,049 - Dsui_1364 0.79 +0.8
1,419,127 - Dsui_1364 0.83 -0.2
1,419,159 - Dsui_1364 0.85 +0.5
1,419,179 + Dsui_1364 0.86 -0.8
1,419,289 + -1.2
1,419,310 + +0.0
1,419,340 + -0.0
1,419,497 - -0.1
1,419,605 + +0.0
1,419,673 + -0.3
1,419,676 - +1.4
1,419,727 + +0.0
1,419,751 - +0.4
1,419,751 - -2.9

Or see this region's nucleotide sequence