Strain Fitness in Dechlorosoma suillum PS around Dsui_1348

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1347 and Dsui_1348 are separated by 162 nucleotidesDsui_1348 and Dsui_1349 are separated by 50 nucleotidesDsui_1349 and Dsui_1350 are separated by 135 nucleotidesDsui_1350 and Dsui_1351 are separated by 184 nucleotides Dsui_1347: Dsui_1347 - HD-GYP domain-containing protein, at 1,403,693 to 1,404,799 _1347 Dsui_1348: Dsui_1348 - hemerythrin-like metal-binding domain-containing protein, at 1,404,962 to 1,405,372 _1348 Dsui_1349: Dsui_1349 - hypothetical protein, at 1,405,423 to 1,405,632 _1349 Dsui_1350: Dsui_1350 - hypothetical protein, at 1,405,768 to 1,405,977 _1350 Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087 _1351 Position (kb) 1404 1405 1406Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1403.973 kb on - strand, within Dsui_1347at 1403.990 kb on - strand, within Dsui_1347at 1404.042 kb on + strand, within Dsui_1347at 1404.055 kb on + strand, within Dsui_1347at 1404.062 kb on - strand, within Dsui_1347at 1404.062 kb on - strand, within Dsui_1347at 1404.063 kb on - strand, within Dsui_1347at 1404.114 kb on + strand, within Dsui_1347at 1404.137 kb on - strand, within Dsui_1347at 1404.179 kb on - strand, within Dsui_1347at 1404.179 kb on - strand, within Dsui_1347at 1404.181 kb on + strand, within Dsui_1347at 1404.181 kb on + strand, within Dsui_1347at 1404.181 kb on + strand, within Dsui_1347at 1404.181 kb on + strand, within Dsui_1347at 1404.261 kb on - strand, within Dsui_1347at 1404.268 kb on - strand, within Dsui_1347at 1404.278 kb on + strand, within Dsui_1347at 1404.288 kb on + strand, within Dsui_1347at 1404.327 kb on + strand, within Dsui_1347at 1404.360 kb on + strand, within Dsui_1347at 1404.363 kb on - strand, within Dsui_1347at 1404.365 kb on + strand, within Dsui_1347at 1404.368 kb on - strand, within Dsui_1347at 1404.368 kb on - strand, within Dsui_1347at 1404.478 kb on + strandat 1404.486 kb on - strand, within Dsui_1347at 1404.496 kb on - strand, within Dsui_1347at 1404.608 kb on - strand, within Dsui_1347at 1404.618 kb on - strand, within Dsui_1347at 1404.623 kb on + strand, within Dsui_1347at 1404.629 kb on + strand, within Dsui_1347at 1404.666 kb on - strand, within Dsui_1347at 1404.671 kb on - strand, within Dsui_1347at 1404.719 kb on - strandat 1404.725 kb on + strandat 1404.805 kb on + strandat 1404.832 kb on + strandat 1404.844 kb on - strandat 1404.846 kb on + strandat 1404.849 kb on - strandat 1404.857 kb on - strandat 1404.919 kb on + strandat 1404.953 kb on + strandat 1404.973 kb on + strandat 1404.980 kb on - strandat 1404.986 kb on - strandat 1404.992 kb on + strandat 1404.999 kb on + strandat 1405.005 kb on - strandat 1405.013 kb on + strand, within Dsui_1348at 1405.015 kb on - strand, within Dsui_1348at 1405.020 kb on + strand, within Dsui_1348at 1405.021 kb on - strand, within Dsui_1348at 1405.050 kb on - strand, within Dsui_1348at 1405.145 kb on - strand, within Dsui_1348at 1405.204 kb on - strand, within Dsui_1348at 1405.208 kb on + strand, within Dsui_1348at 1405.290 kb on + strand, within Dsui_1348at 1405.321 kb on + strand, within Dsui_1348at 1405.342 kb on + strandat 1405.456 kb on + strand, within Dsui_1349at 1405.492 kb on - strand, within Dsui_1349at 1405.494 kb on + strand, within Dsui_1349at 1405.530 kb on + strand, within Dsui_1349at 1405.565 kb on - strand, within Dsui_1349at 1405.573 kb on + strand, within Dsui_1349at 1405.676 kb on + strandat 1405.740 kb on + strandat 1405.740 kb on + strandat 1405.762 kb on + strandat 1405.763 kb on + strandat 1405.770 kb on - strandat 1405.771 kb on - strandat 1405.818 kb on - strandat 1405.881 kb on - strand, within Dsui_1350at 1405.989 kb on - strandat 1406.075 kb on + strandat 1406.112 kb on + strandat 1406.117 kb on + strandat 1406.119 kb on - strandat 1406.127 kb on + strandat 1406.127 kb on + strandat 1406.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,403,973 - Dsui_1347 0.25 +0.3
1,403,990 - Dsui_1347 0.27 +0.5
1,404,042 + Dsui_1347 0.32 -1.6
1,404,055 + Dsui_1347 0.33 +1.0
1,404,062 - Dsui_1347 0.33 +0.1
1,404,062 - Dsui_1347 0.33 +1.0
1,404,063 - Dsui_1347 0.33 -1.6
1,404,114 + Dsui_1347 0.38 +0.4
1,404,137 - Dsui_1347 0.40 +0.3
1,404,179 - Dsui_1347 0.44 +0.8
1,404,179 - Dsui_1347 0.44 +0.2
1,404,181 + Dsui_1347 0.44 +0.0
1,404,181 + Dsui_1347 0.44 -0.5
1,404,181 + Dsui_1347 0.44 +0.8
1,404,181 + Dsui_1347 0.44 +0.6
1,404,261 - Dsui_1347 0.51 +0.2
1,404,268 - Dsui_1347 0.52 +1.0
1,404,278 + Dsui_1347 0.53 -0.6
1,404,288 + Dsui_1347 0.54 +0.0
1,404,327 + Dsui_1347 0.57 +0.4
1,404,360 + Dsui_1347 0.60 +0.3
1,404,363 - Dsui_1347 0.61 +2.1
1,404,365 + Dsui_1347 0.61 +0.4
1,404,368 - Dsui_1347 0.61 +1.2
1,404,368 - Dsui_1347 0.61 +0.8
1,404,478 + +0.3
1,404,486 - Dsui_1347 0.72 +1.6
1,404,496 - Dsui_1347 0.73 +0.5
1,404,608 - Dsui_1347 0.83 +0.3
1,404,618 - Dsui_1347 0.84 +0.6
1,404,623 + Dsui_1347 0.84 -0.1
1,404,629 + Dsui_1347 0.85 +0.7
1,404,666 - Dsui_1347 0.88 -0.7
1,404,671 - Dsui_1347 0.88 +0.1
1,404,719 - -0.0
1,404,725 + -2.7
1,404,805 + -1.7
1,404,832 + +0.7
1,404,844 - -1.3
1,404,846 + -1.1
1,404,849 - -1.9
1,404,857 - -2.1
1,404,919 + -0.5
1,404,953 + -0.3
1,404,973 + -2.9
1,404,980 - -5.4
1,404,986 - -2.1
1,404,992 + -2.6
1,404,999 + -4.9
1,405,005 - -2.0
1,405,013 + Dsui_1348 0.12 -4.3
1,405,015 - Dsui_1348 0.13 -2.2
1,405,020 + Dsui_1348 0.14 -2.4
1,405,021 - Dsui_1348 0.14 -3.9
1,405,050 - Dsui_1348 0.21 -2.8
1,405,145 - Dsui_1348 0.45 -2.9
1,405,204 - Dsui_1348 0.59 -2.6
1,405,208 + Dsui_1348 0.60 -1.2
1,405,290 + Dsui_1348 0.80 -3.3
1,405,321 + Dsui_1348 0.87 -2.3
1,405,342 + -0.1
1,405,456 + Dsui_1349 0.16 +0.2
1,405,492 - Dsui_1349 0.33 -0.2
1,405,494 + Dsui_1349 0.34 -0.1
1,405,530 + Dsui_1349 0.51 +0.4
1,405,565 - Dsui_1349 0.68 -1.0
1,405,573 + Dsui_1349 0.71 -0.2
1,405,676 + -1.3
1,405,740 + +0.9
1,405,740 + +1.4
1,405,762 + +0.3
1,405,763 + +1.2
1,405,770 - +0.1
1,405,771 - +1.2
1,405,818 - -2.5
1,405,881 - Dsui_1350 0.54 -1.9
1,405,989 - -0.2
1,406,075 + +1.0
1,406,112 + +1.7
1,406,117 + +1.9
1,406,119 - -2.8
1,406,127 + +0.8
1,406,127 + +0.4
1,406,174 + +0.4

Or see this region's nucleotide sequence