Strain Fitness in Dechlorosoma suillum PS around Dsui_1318

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1316 and Dsui_1317 overlap by 22 nucleotidesDsui_1317 and Dsui_1318 are separated by 98 nucleotidesDsui_1318 and Dsui_1319 are separated by 2 nucleotides Dsui_1316: Dsui_1316 - hypothetical protein, at 1,375,404 to 1,376,045 _1316 Dsui_1317: Dsui_1317 - putative regulatory protein, FmdB family, at 1,376,024 to 1,376,296 _1317 Dsui_1318: Dsui_1318 - prepilin signal peptidase PulO-like peptidase, at 1,376,395 to 1,377,249 _1318 Dsui_1319: Dsui_1319 - type II secretory pathway, component PulF, at 1,377,252 to 1,378,496 _1319 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1375.453 kb on - strandat 1375.480 kb on - strand, within Dsui_1316at 1375.481 kb on - strand, within Dsui_1316at 1375.678 kb on - strand, within Dsui_1316at 1375.720 kb on - strand, within Dsui_1316at 1375.956 kb on - strand, within Dsui_1316at 1376.156 kb on - strand, within Dsui_1317at 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.349 kb on + strandat 1376.401 kb on - strandat 1376.421 kb on - strandat 1376.432 kb on + strandat 1376.437 kb on + strandat 1376.537 kb on + strand, within Dsui_1318at 1376.549 kb on - strand, within Dsui_1318at 1376.564 kb on + strand, within Dsui_1318at 1376.571 kb on - strand, within Dsui_1318at 1376.637 kb on - strand, within Dsui_1318at 1376.682 kb on + strand, within Dsui_1318at 1376.720 kb on - strand, within Dsui_1318at 1376.770 kb on - strand, within Dsui_1318at 1376.780 kb on - strand, within Dsui_1318at 1376.840 kb on - strand, within Dsui_1318at 1376.905 kb on + strand, within Dsui_1318at 1376.992 kb on + strand, within Dsui_1318at 1377.073 kb on + strand, within Dsui_1318at 1377.113 kb on - strand, within Dsui_1318at 1377.135 kb on + strandat 1377.191 kb on - strandat 1377.198 kb on - strandat 1377.209 kb on + strandat 1377.215 kb on - strandat 1377.227 kb on - strandat 1377.284 kb on + strandat 1377.293 kb on - strandat 1377.293 kb on - strandat 1377.325 kb on - strandat 1377.349 kb on + strandat 1377.360 kb on + strandat 1377.373 kb on - strandat 1377.403 kb on + strand, within Dsui_1319at 1377.403 kb on + strand, within Dsui_1319at 1377.403 kb on + strand, within Dsui_1319at 1377.403 kb on + strand, within Dsui_1319at 1377.403 kb on + strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.411 kb on - strand, within Dsui_1319at 1377.413 kb on + strand, within Dsui_1319at 1377.413 kb on + strand, within Dsui_1319at 1377.421 kb on - strand, within Dsui_1319at 1377.421 kb on - strand, within Dsui_1319at 1377.421 kb on - strand, within Dsui_1319at 1377.421 kb on - strand, within Dsui_1319at 1377.426 kb on - strand, within Dsui_1319at 1377.479 kb on + strandat 1377.479 kb on + strand, within Dsui_1319at 1377.479 kb on + strand, within Dsui_1319at 1377.487 kb on - strand, within Dsui_1319at 1377.496 kb on + strand, within Dsui_1319at 1377.496 kb on + strand, within Dsui_1319at 1377.496 kb on + strand, within Dsui_1319at 1377.499 kb on - strand, within Dsui_1319at 1377.499 kb on - strand, within Dsui_1319at 1377.501 kb on + strand, within Dsui_1319at 1377.501 kb on + strand, within Dsui_1319at 1377.504 kb on - strand, within Dsui_1319at 1377.504 kb on - strand, within Dsui_1319at 1377.504 kb on - strand, within Dsui_1319at 1377.506 kb on + strand, within Dsui_1319at 1377.506 kb on + strand, within Dsui_1319at 1377.509 kb on - strand, within Dsui_1319at 1377.514 kb on - strand, within Dsui_1319at 1377.520 kb on - strand, within Dsui_1319at 1377.569 kb on - strand, within Dsui_1319at 1377.575 kb on - strand, within Dsui_1319at 1377.588 kb on + strand, within Dsui_1319at 1377.588 kb on + strand, within Dsui_1319at 1377.595 kb on + strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.603 kb on - strand, within Dsui_1319at 1377.637 kb on + strand, within Dsui_1319at 1377.698 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.706 kb on - strand, within Dsui_1319at 1377.708 kb on + strand, within Dsui_1319at 1377.711 kb on - strand, within Dsui_1319at 1377.711 kb on - strand, within Dsui_1319at 1377.716 kb on - strand, within Dsui_1319at 1377.716 kb on - strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.759 kb on + strand, within Dsui_1319at 1377.767 kb on - strand, within Dsui_1319at 1377.769 kb on + strand, within Dsui_1319at 1377.774 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.803 kb on - strand, within Dsui_1319at 1377.805 kb on + strand, within Dsui_1319at 1377.834 kb on - strand, within Dsui_1319at 1377.834 kb on - strand, within Dsui_1319at 1377.836 kb on + strand, within Dsui_1319at 1377.836 kb on + strand, within Dsui_1319at 1377.844 kb on + strand, within Dsui_1319at 1377.844 kb on - strand, within Dsui_1319at 1377.850 kb on - strand, within Dsui_1319at 1377.850 kb on - strand, within Dsui_1319at 1377.852 kb on - strand, within Dsui_1319at 1377.852 kb on - strand, within Dsui_1319at 1377.859 kb on + strand, within Dsui_1319at 1377.859 kb on - strand, within Dsui_1319at 1377.886 kb on - strand, within Dsui_1319at 1377.911 kb on + strand, within Dsui_1319at 1377.914 kb on + strand, within Dsui_1319at 1377.914 kb on - strand, within Dsui_1319at 1377.921 kb on - strand, within Dsui_1319at 1377.949 kb on + strand, within Dsui_1319at 1377.952 kb on - strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.959 kb on + strand, within Dsui_1319at 1377.959 kb on + strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.964 kb on + strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.972 kb on - strand, within Dsui_1319at 1378.025 kb on + strand, within Dsui_1319at 1378.036 kb on + strand, within Dsui_1319at 1378.036 kb on + strand, within Dsui_1319at 1378.044 kb on - strand, within Dsui_1319at 1378.113 kb on + strand, within Dsui_1319at 1378.141 kb on + strand, within Dsui_1319at 1378.141 kb on + strand, within Dsui_1319at 1378.160 kb on + strandat 1378.175 kb on + strand, within Dsui_1319at 1378.184 kb on - strand, within Dsui_1319at 1378.193 kb on - strand, within Dsui_1319at 1378.200 kb on + strand, within Dsui_1319at 1378.206 kb on + strand, within Dsui_1319at 1378.215 kb on - strand, within Dsui_1319

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,375,453 - +1.3
1,375,480 - Dsui_1316 0.12 +1.2
1,375,481 - Dsui_1316 0.12 +1.1
1,375,678 - Dsui_1316 0.43 +0.8
1,375,720 - Dsui_1316 0.49 +0.5
1,375,956 - Dsui_1316 0.86 -0.4
1,376,156 - Dsui_1317 0.48 -1.6
1,376,339 + -0.8
1,376,339 + +0.3
1,376,339 + -0.3
1,376,339 + -0.3
1,376,339 + -3.0
1,376,339 + +1.0
1,376,347 - +0.7
1,376,347 - +0.5
1,376,347 - -0.1
1,376,347 - +1.8
1,376,347 - +0.2
1,376,349 + -0.3
1,376,401 - -0.9
1,376,421 - +0.6
1,376,432 + -2.0
1,376,437 + -3.1
1,376,537 + Dsui_1318 0.17 -2.2
1,376,549 - Dsui_1318 0.18 -1.0
1,376,564 + Dsui_1318 0.20 -0.5
1,376,571 - Dsui_1318 0.21 -4.5
1,376,637 - Dsui_1318 0.28 -2.4
1,376,682 + Dsui_1318 0.34 -2.3
1,376,720 - Dsui_1318 0.38 -1.0
1,376,770 - Dsui_1318 0.44 -1.4
1,376,780 - Dsui_1318 0.45 -1.4
1,376,840 - Dsui_1318 0.52 -0.8
1,376,905 + Dsui_1318 0.60 -1.7
1,376,992 + Dsui_1318 0.70 -1.3
1,377,073 + Dsui_1318 0.79 -2.6
1,377,113 - Dsui_1318 0.84 -1.2
1,377,135 + -0.3
1,377,191 - -1.0
1,377,198 - -1.6
1,377,209 + -2.4
1,377,215 - -1.3
1,377,227 - -2.7
1,377,284 + -0.0
1,377,293 - +1.3
1,377,293 - +1.0
1,377,325 - +1.3
1,377,349 + +0.0
1,377,360 + +0.1
1,377,373 - +0.7
1,377,403 + Dsui_1319 0.12 -0.0
1,377,403 + Dsui_1319 0.12 -0.0
1,377,403 + Dsui_1319 0.12 -0.7
1,377,403 + Dsui_1319 0.12 +0.6
1,377,403 + Dsui_1319 0.12 -2.1
1,377,411 - Dsui_1319 0.13 +1.1
1,377,411 - Dsui_1319 0.13 +0.2
1,377,411 - Dsui_1319 0.13 +0.8
1,377,411 - Dsui_1319 0.13 +0.6
1,377,411 - Dsui_1319 0.13 +1.1
1,377,411 - Dsui_1319 0.13 +1.6
1,377,411 - Dsui_1319 0.13 +1.3
1,377,413 + Dsui_1319 0.13 -0.2
1,377,413 + Dsui_1319 0.13 -0.8
1,377,421 - Dsui_1319 0.14 +0.8
1,377,421 - Dsui_1319 0.14 +0.8
1,377,421 - Dsui_1319 0.14 +0.6
1,377,421 - Dsui_1319 0.14 +0.9
1,377,426 - Dsui_1319 0.14 +0.9
1,377,479 + -0.1
1,377,479 + Dsui_1319 0.18 -0.5
1,377,479 + Dsui_1319 0.18 +1.1
1,377,487 - Dsui_1319 0.19 +1.1
1,377,496 + Dsui_1319 0.20 +2.5
1,377,496 + Dsui_1319 0.20 -1.5
1,377,496 + Dsui_1319 0.20 -0.6
1,377,499 - Dsui_1319 0.20 +0.9
1,377,499 - Dsui_1319 0.20 -0.6
1,377,501 + Dsui_1319 0.20 +1.9
1,377,501 + Dsui_1319 0.20 +0.8
1,377,504 - Dsui_1319 0.20 +0.6
1,377,504 - Dsui_1319 0.20 +0.4
1,377,504 - Dsui_1319 0.20 +1.4
1,377,506 + Dsui_1319 0.20 -2.1
1,377,506 + Dsui_1319 0.20 +0.4
1,377,509 - Dsui_1319 0.21 -0.1
1,377,514 - Dsui_1319 0.21 +1.0
1,377,520 - Dsui_1319 0.22 +0.9
1,377,569 - Dsui_1319 0.25 +1.3
1,377,575 - Dsui_1319 0.26 +0.9
1,377,588 + Dsui_1319 0.27 +0.4
1,377,588 + Dsui_1319 0.27 -0.1
1,377,595 + Dsui_1319 0.28 +0.0
1,377,596 - Dsui_1319 0.28 +0.3
1,377,596 - Dsui_1319 0.28 +1.0
1,377,596 - Dsui_1319 0.28 -0.5
1,377,596 - Dsui_1319 0.28 +2.0
1,377,603 - Dsui_1319 0.28 +0.4
1,377,637 + Dsui_1319 0.31 -0.0
1,377,698 + Dsui_1319 0.36 +0.2
1,377,703 + Dsui_1319 0.36 -0.1
1,377,703 + Dsui_1319 0.36 -1.7
1,377,703 + Dsui_1319 0.36 -1.0
1,377,706 - Dsui_1319 0.36 +0.6
1,377,708 + Dsui_1319 0.37 +0.2
1,377,711 - Dsui_1319 0.37 +2.1
1,377,711 - Dsui_1319 0.37 +1.0
1,377,716 - Dsui_1319 0.37 +0.6
1,377,716 - Dsui_1319 0.37 +2.1
1,377,727 + Dsui_1319 0.38 -1.3
1,377,727 + Dsui_1319 0.38 -0.1
1,377,727 + Dsui_1319 0.38 -1.5
1,377,727 + Dsui_1319 0.38 -0.6
1,377,727 + Dsui_1319 0.38 -0.3
1,377,727 + Dsui_1319 0.38 -3.6
1,377,727 + Dsui_1319 0.38 -1.0
1,377,735 - Dsui_1319 0.39 +1.0
1,377,735 - Dsui_1319 0.39 +0.2
1,377,735 - Dsui_1319 0.39 +0.8
1,377,735 - Dsui_1319 0.39 +1.1
1,377,735 - Dsui_1319 0.39 +0.4
1,377,759 + Dsui_1319 0.41 -1.3
1,377,767 - Dsui_1319 0.41 +0.9
1,377,769 + Dsui_1319 0.42 -1.2
1,377,774 - Dsui_1319 0.42 +0.5
1,377,777 - Dsui_1319 0.42 -0.2
1,377,777 - Dsui_1319 0.42 +0.6
1,377,777 - Dsui_1319 0.42 -0.1
1,377,803 - Dsui_1319 0.44 +1.9
1,377,805 + Dsui_1319 0.44 -3.1
1,377,834 - Dsui_1319 0.47 +1.5
1,377,834 - Dsui_1319 0.47 +0.6
1,377,836 + Dsui_1319 0.47 -1.2
1,377,836 + Dsui_1319 0.47 -3.9
1,377,844 + Dsui_1319 0.48 -0.1
1,377,844 - Dsui_1319 0.48 +1.1
1,377,850 - Dsui_1319 0.48 +0.6
1,377,850 - Dsui_1319 0.48 +0.2
1,377,852 - Dsui_1319 0.48 +1.3
1,377,852 - Dsui_1319 0.48 -0.7
1,377,859 + Dsui_1319 0.49 +0.3
1,377,859 - Dsui_1319 0.49 +0.6
1,377,886 - Dsui_1319 0.51 +0.3
1,377,911 + Dsui_1319 0.53 -0.7
1,377,914 + Dsui_1319 0.53 -1.5
1,377,914 - Dsui_1319 0.53 +1.3
1,377,921 - Dsui_1319 0.54 +1.2
1,377,949 + Dsui_1319 0.56 -3.0
1,377,952 - Dsui_1319 0.56 +0.5
1,377,954 + Dsui_1319 0.56 -0.7
1,377,954 + Dsui_1319 0.56 -2.2
1,377,954 + Dsui_1319 0.56 -0.1
1,377,954 + -1.1
1,377,954 + -1.8
1,377,954 + Dsui_1319 0.56 -0.3
1,377,954 + -1.8
1,377,954 + -1.3
1,377,954 + Dsui_1319 0.56 -1.0
1,377,954 + Dsui_1319 0.56 -1.0
1,377,954 + Dsui_1319 0.56 -0.5
1,377,954 + Dsui_1319 0.56 +0.9
1,377,954 + -1.1
1,377,954 + Dsui_1319 0.56 -3.6
1,377,954 + Dsui_1319 0.56 -1.3
1,377,954 + Dsui_1319 0.56 -1.3
1,377,957 - Dsui_1319 0.57 +1.4
1,377,957 - Dsui_1319 0.57 +0.8
1,377,957 - Dsui_1319 0.57 +1.8
1,377,957 - Dsui_1319 0.57 +0.5
1,377,957 - Dsui_1319 0.57 +1.1
1,377,959 + Dsui_1319 0.57 -0.5
1,377,959 + Dsui_1319 0.57 -2.0
1,377,962 - Dsui_1319 0.57 +1.7
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +1.4
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +0.4
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +1.2
1,377,962 - Dsui_1319 0.57 +1.1
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +1.3
1,377,962 - Dsui_1319 0.57 +0.8
1,377,962 - Dsui_1319 0.57 +0.5
1,377,962 - Dsui_1319 0.57 +1.6
1,377,962 - Dsui_1319 0.57 +0.6
1,377,964 + Dsui_1319 0.57 +0.8
1,377,967 - Dsui_1319 0.57 +1.2
1,377,967 - Dsui_1319 0.57 +1.2
1,377,967 - Dsui_1319 0.57 +1.3
1,377,967 - Dsui_1319 0.57 +1.4
1,377,967 - Dsui_1319 0.57 +0.7
1,377,967 - Dsui_1319 0.57 +0.3
1,377,967 - Dsui_1319 0.57 +0.7
1,377,972 - Dsui_1319 0.58 +0.7
1,378,025 + Dsui_1319 0.62 -1.4
1,378,036 + Dsui_1319 0.63 -0.1
1,378,036 + Dsui_1319 0.63 -1.2
1,378,044 - Dsui_1319 0.64 +0.7
1,378,113 + Dsui_1319 0.69 -0.7
1,378,141 + Dsui_1319 0.71 -0.0
1,378,141 + Dsui_1319 0.71 -0.3
1,378,160 + -0.1
1,378,175 + Dsui_1319 0.74 -0.6
1,378,184 - Dsui_1319 0.75 +0.8
1,378,193 - Dsui_1319 0.76 +0.7
1,378,200 + Dsui_1319 0.76 -0.7
1,378,206 + Dsui_1319 0.77 -0.4
1,378,215 - Dsui_1319 0.77 +2.0

Or see this region's nucleotide sequence