Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1316 and Dsui_1317 overlap by 22 nucleotides Dsui_1317 and Dsui_1318 are separated by 98 nucleotides Dsui_1318 and Dsui_1319 are separated by 2 nucleotides
Dsui_1316: Dsui_1316 - hypothetical protein, at 1,375,404 to 1,376,045
_1316
Dsui_1317: Dsui_1317 - putative regulatory protein, FmdB family, at 1,376,024 to 1,376,296
_1317
Dsui_1318: Dsui_1318 - prepilin signal peptidase PulO-like peptidase, at 1,376,395 to 1,377,249
_1318
Dsui_1319: Dsui_1319 - type II secretory pathway, component PulF, at 1,377,252 to 1,378,496
_1319
Position (kb)
1376
1377
1378 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1375.453 kb on - strand at 1375.480 kb on - strand, within Dsui_1316 at 1375.481 kb on - strand, within Dsui_1316 at 1375.678 kb on - strand, within Dsui_1316 at 1375.720 kb on - strand, within Dsui_1316 at 1375.956 kb on - strand, within Dsui_1316 at 1376.156 kb on - strand, within Dsui_1317 at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.339 kb on + strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.347 kb on - strand at 1376.349 kb on + strand at 1376.401 kb on - strand at 1376.421 kb on - strand at 1376.432 kb on + strand at 1376.437 kb on + strand at 1376.537 kb on + strand, within Dsui_1318 at 1376.549 kb on - strand, within Dsui_1318 at 1376.564 kb on + strand, within Dsui_1318 at 1376.571 kb on - strand, within Dsui_1318 at 1376.637 kb on - strand, within Dsui_1318 at 1376.682 kb on + strand, within Dsui_1318 at 1376.720 kb on - strand, within Dsui_1318 at 1376.770 kb on - strand, within Dsui_1318 at 1376.780 kb on - strand, within Dsui_1318 at 1376.840 kb on - strand, within Dsui_1318 at 1376.905 kb on + strand, within Dsui_1318 at 1376.992 kb on + strand, within Dsui_1318 at 1377.073 kb on + strand, within Dsui_1318 at 1377.113 kb on - strand, within Dsui_1318 at 1377.135 kb on + strand at 1377.191 kb on - strand at 1377.198 kb on - strand at 1377.209 kb on + strand at 1377.215 kb on - strand at 1377.227 kb on - strand at 1377.284 kb on + strand at 1377.293 kb on - strand at 1377.293 kb on - strand at 1377.325 kb on - strand at 1377.349 kb on + strand at 1377.360 kb on + strand at 1377.373 kb on - strand at 1377.403 kb on + strand, within Dsui_1319 at 1377.403 kb on + strand, within Dsui_1319 at 1377.403 kb on + strand, within Dsui_1319 at 1377.403 kb on + strand, within Dsui_1319 at 1377.403 kb on + strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.411 kb on - strand, within Dsui_1319 at 1377.413 kb on + strand, within Dsui_1319 at 1377.413 kb on + strand, within Dsui_1319 at 1377.421 kb on - strand, within Dsui_1319 at 1377.421 kb on - strand, within Dsui_1319 at 1377.421 kb on - strand, within Dsui_1319 at 1377.421 kb on - strand, within Dsui_1319 at 1377.426 kb on - strand, within Dsui_1319 at 1377.479 kb on + strand at 1377.479 kb on + strand, within Dsui_1319 at 1377.479 kb on + strand, within Dsui_1319 at 1377.487 kb on - strand, within Dsui_1319 at 1377.496 kb on + strand, within Dsui_1319 at 1377.496 kb on + strand, within Dsui_1319 at 1377.496 kb on + strand, within Dsui_1319 at 1377.499 kb on - strand, within Dsui_1319 at 1377.499 kb on - strand, within Dsui_1319 at 1377.501 kb on + strand, within Dsui_1319 at 1377.501 kb on + strand, within Dsui_1319 at 1377.504 kb on - strand, within Dsui_1319 at 1377.504 kb on - strand, within Dsui_1319 at 1377.504 kb on - strand, within Dsui_1319 at 1377.506 kb on + strand, within Dsui_1319 at 1377.506 kb on + strand, within Dsui_1319 at 1377.509 kb on - strand, within Dsui_1319 at 1377.514 kb on - strand, within Dsui_1319 at 1377.520 kb on - strand, within Dsui_1319 at 1377.569 kb on - strand, within Dsui_1319 at 1377.575 kb on - strand, within Dsui_1319 at 1377.588 kb on + strand, within Dsui_1319 at 1377.588 kb on + strand, within Dsui_1319 at 1377.595 kb on + strand, within Dsui_1319 at 1377.596 kb on - strand, within Dsui_1319 at 1377.596 kb on - strand, within Dsui_1319 at 1377.596 kb on - strand, within Dsui_1319 at 1377.596 kb on - strand, within Dsui_1319 at 1377.603 kb on - strand, within Dsui_1319 at 1377.637 kb on + strand, within Dsui_1319 at 1377.698 kb on + strand, within Dsui_1319 at 1377.703 kb on + strand, within Dsui_1319 at 1377.703 kb on + strand, within Dsui_1319 at 1377.703 kb on + strand, within Dsui_1319 at 1377.706 kb on - strand, within Dsui_1319 at 1377.708 kb on + strand, within Dsui_1319 at 1377.711 kb on - strand, within Dsui_1319 at 1377.711 kb on - strand, within Dsui_1319 at 1377.716 kb on - strand, within Dsui_1319 at 1377.716 kb on - strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.727 kb on + strand, within Dsui_1319 at 1377.735 kb on - strand, within Dsui_1319 at 1377.735 kb on - strand, within Dsui_1319 at 1377.735 kb on - strand, within Dsui_1319 at 1377.735 kb on - strand, within Dsui_1319 at 1377.735 kb on - strand, within Dsui_1319 at 1377.759 kb on + strand, within Dsui_1319 at 1377.767 kb on - strand, within Dsui_1319 at 1377.769 kb on + strand, within Dsui_1319 at 1377.774 kb on - strand, within Dsui_1319 at 1377.777 kb on - strand, within Dsui_1319 at 1377.777 kb on - strand, within Dsui_1319 at 1377.777 kb on - strand, within Dsui_1319 at 1377.803 kb on - strand, within Dsui_1319 at 1377.805 kb on + strand, within Dsui_1319 at 1377.834 kb on - strand, within Dsui_1319 at 1377.834 kb on - strand, within Dsui_1319 at 1377.836 kb on + strand, within Dsui_1319 at 1377.836 kb on + strand, within Dsui_1319 at 1377.844 kb on + strand, within Dsui_1319 at 1377.844 kb on - strand, within Dsui_1319 at 1377.850 kb on - strand, within Dsui_1319 at 1377.850 kb on - strand, within Dsui_1319 at 1377.852 kb on - strand, within Dsui_1319 at 1377.852 kb on - strand, within Dsui_1319 at 1377.859 kb on + strand, within Dsui_1319 at 1377.859 kb on - strand, within Dsui_1319 at 1377.886 kb on - strand, within Dsui_1319 at 1377.911 kb on + strand, within Dsui_1319 at 1377.914 kb on + strand, within Dsui_1319 at 1377.914 kb on - strand, within Dsui_1319 at 1377.921 kb on - strand, within Dsui_1319 at 1377.949 kb on + strand, within Dsui_1319 at 1377.952 kb on - strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand at 1377.954 kb on + strand at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand at 1377.954 kb on + strand at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.954 kb on + strand, within Dsui_1319 at 1377.957 kb on - strand, within Dsui_1319 at 1377.957 kb on - strand, within Dsui_1319 at 1377.957 kb on - strand, within Dsui_1319 at 1377.957 kb on - strand, within Dsui_1319 at 1377.957 kb on - strand, within Dsui_1319 at 1377.959 kb on + strand, within Dsui_1319 at 1377.959 kb on + strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.962 kb on - strand, within Dsui_1319 at 1377.964 kb on + strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.967 kb on - strand, within Dsui_1319 at 1377.972 kb on - strand, within Dsui_1319 at 1378.025 kb on + strand, within Dsui_1319 at 1378.036 kb on + strand, within Dsui_1319 at 1378.036 kb on + strand, within Dsui_1319 at 1378.044 kb on - strand, within Dsui_1319 at 1378.113 kb on + strand, within Dsui_1319 at 1378.141 kb on + strand, within Dsui_1319 at 1378.141 kb on + strand, within Dsui_1319 at 1378.160 kb on + strand at 1378.175 kb on + strand, within Dsui_1319 at 1378.184 kb on - strand, within Dsui_1319 at 1378.193 kb on - strand, within Dsui_1319 at 1378.200 kb on + strand, within Dsui_1319 at 1378.206 kb on + strand, within Dsui_1319 at 1378.215 kb on - strand, within Dsui_1319
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 1,375,453 - +1.3 1,375,480 - Dsui_1316 0.12 +1.2 1,375,481 - Dsui_1316 0.12 +1.1 1,375,678 - Dsui_1316 0.43 +0.8 1,375,720 - Dsui_1316 0.49 +0.5 1,375,956 - Dsui_1316 0.86 -0.4 1,376,156 - Dsui_1317 0.48 -1.6 1,376,339 + -0.8 1,376,339 + +0.3 1,376,339 + -0.3 1,376,339 + -0.3 1,376,339 + -3.0 1,376,339 + +1.0 1,376,347 - +0.7 1,376,347 - +0.5 1,376,347 - -0.1 1,376,347 - +1.8 1,376,347 - +0.2 1,376,349 + -0.3 1,376,401 - -0.9 1,376,421 - +0.6 1,376,432 + -2.0 1,376,437 + -3.1 1,376,537 + Dsui_1318 0.17 -2.2 1,376,549 - Dsui_1318 0.18 -1.0 1,376,564 + Dsui_1318 0.20 -0.5 1,376,571 - Dsui_1318 0.21 -4.5 1,376,637 - Dsui_1318 0.28 -2.4 1,376,682 + Dsui_1318 0.34 -2.3 1,376,720 - Dsui_1318 0.38 -1.0 1,376,770 - Dsui_1318 0.44 -1.4 1,376,780 - Dsui_1318 0.45 -1.4 1,376,840 - Dsui_1318 0.52 -0.8 1,376,905 + Dsui_1318 0.60 -1.7 1,376,992 + Dsui_1318 0.70 -1.3 1,377,073 + Dsui_1318 0.79 -2.6 1,377,113 - Dsui_1318 0.84 -1.2 1,377,135 + -0.3 1,377,191 - -1.0 1,377,198 - -1.6 1,377,209 + -2.4 1,377,215 - -1.3 1,377,227 - -2.7 1,377,284 + -0.0 1,377,293 - +1.3 1,377,293 - +1.0 1,377,325 - +1.3 1,377,349 + +0.0 1,377,360 + +0.1 1,377,373 - +0.7 1,377,403 + Dsui_1319 0.12 -0.0 1,377,403 + Dsui_1319 0.12 -0.0 1,377,403 + Dsui_1319 0.12 -0.7 1,377,403 + Dsui_1319 0.12 +0.6 1,377,403 + Dsui_1319 0.12 -2.1 1,377,411 - Dsui_1319 0.13 +1.1 1,377,411 - Dsui_1319 0.13 +0.2 1,377,411 - Dsui_1319 0.13 +0.8 1,377,411 - Dsui_1319 0.13 +0.6 1,377,411 - Dsui_1319 0.13 +1.1 1,377,411 - Dsui_1319 0.13 +1.6 1,377,411 - Dsui_1319 0.13 +1.3 1,377,413 + Dsui_1319 0.13 -0.2 1,377,413 + Dsui_1319 0.13 -0.8 1,377,421 - Dsui_1319 0.14 +0.8 1,377,421 - Dsui_1319 0.14 +0.8 1,377,421 - Dsui_1319 0.14 +0.6 1,377,421 - Dsui_1319 0.14 +0.9 1,377,426 - Dsui_1319 0.14 +0.9 1,377,479 + -0.1 1,377,479 + Dsui_1319 0.18 -0.5 1,377,479 + Dsui_1319 0.18 +1.1 1,377,487 - Dsui_1319 0.19 +1.1 1,377,496 + Dsui_1319 0.20 +2.5 1,377,496 + Dsui_1319 0.20 -1.5 1,377,496 + Dsui_1319 0.20 -0.6 1,377,499 - Dsui_1319 0.20 +0.9 1,377,499 - Dsui_1319 0.20 -0.6 1,377,501 + Dsui_1319 0.20 +1.9 1,377,501 + Dsui_1319 0.20 +0.8 1,377,504 - Dsui_1319 0.20 +0.6 1,377,504 - Dsui_1319 0.20 +0.4 1,377,504 - Dsui_1319 0.20 +1.4 1,377,506 + Dsui_1319 0.20 -2.1 1,377,506 + Dsui_1319 0.20 +0.4 1,377,509 - Dsui_1319 0.21 -0.1 1,377,514 - Dsui_1319 0.21 +1.0 1,377,520 - Dsui_1319 0.22 +0.9 1,377,569 - Dsui_1319 0.25 +1.3 1,377,575 - Dsui_1319 0.26 +0.9 1,377,588 + Dsui_1319 0.27 +0.4 1,377,588 + Dsui_1319 0.27 -0.1 1,377,595 + Dsui_1319 0.28 +0.0 1,377,596 - Dsui_1319 0.28 +0.3 1,377,596 - Dsui_1319 0.28 +1.0 1,377,596 - Dsui_1319 0.28 -0.5 1,377,596 - Dsui_1319 0.28 +2.0 1,377,603 - Dsui_1319 0.28 +0.4 1,377,637 + Dsui_1319 0.31 -0.0 1,377,698 + Dsui_1319 0.36 +0.2 1,377,703 + Dsui_1319 0.36 -0.1 1,377,703 + Dsui_1319 0.36 -1.7 1,377,703 + Dsui_1319 0.36 -1.0 1,377,706 - Dsui_1319 0.36 +0.6 1,377,708 + Dsui_1319 0.37 +0.2 1,377,711 - Dsui_1319 0.37 +2.1 1,377,711 - Dsui_1319 0.37 +1.0 1,377,716 - Dsui_1319 0.37 +0.6 1,377,716 - Dsui_1319 0.37 +2.1 1,377,727 + Dsui_1319 0.38 -1.3 1,377,727 + Dsui_1319 0.38 -0.1 1,377,727 + Dsui_1319 0.38 -1.5 1,377,727 + Dsui_1319 0.38 -0.6 1,377,727 + Dsui_1319 0.38 -0.3 1,377,727 + Dsui_1319 0.38 -3.6 1,377,727 + Dsui_1319 0.38 -1.0 1,377,735 - Dsui_1319 0.39 +1.0 1,377,735 - Dsui_1319 0.39 +0.2 1,377,735 - Dsui_1319 0.39 +0.8 1,377,735 - Dsui_1319 0.39 +1.1 1,377,735 - Dsui_1319 0.39 +0.4 1,377,759 + Dsui_1319 0.41 -1.3 1,377,767 - Dsui_1319 0.41 +0.9 1,377,769 + Dsui_1319 0.42 -1.2 1,377,774 - Dsui_1319 0.42 +0.5 1,377,777 - Dsui_1319 0.42 -0.2 1,377,777 - Dsui_1319 0.42 +0.6 1,377,777 - Dsui_1319 0.42 -0.1 1,377,803 - Dsui_1319 0.44 +1.9 1,377,805 + Dsui_1319 0.44 -3.1 1,377,834 - Dsui_1319 0.47 +1.5 1,377,834 - Dsui_1319 0.47 +0.6 1,377,836 + Dsui_1319 0.47 -1.2 1,377,836 + Dsui_1319 0.47 -3.9 1,377,844 + Dsui_1319 0.48 -0.1 1,377,844 - Dsui_1319 0.48 +1.1 1,377,850 - Dsui_1319 0.48 +0.6 1,377,850 - Dsui_1319 0.48 +0.2 1,377,852 - Dsui_1319 0.48 +1.3 1,377,852 - Dsui_1319 0.48 -0.7 1,377,859 + Dsui_1319 0.49 +0.3 1,377,859 - Dsui_1319 0.49 +0.6 1,377,886 - Dsui_1319 0.51 +0.3 1,377,911 + Dsui_1319 0.53 -0.7 1,377,914 + Dsui_1319 0.53 -1.5 1,377,914 - Dsui_1319 0.53 +1.3 1,377,921 - Dsui_1319 0.54 +1.2 1,377,949 + Dsui_1319 0.56 -3.0 1,377,952 - Dsui_1319 0.56 +0.5 1,377,954 + Dsui_1319 0.56 -0.7 1,377,954 + Dsui_1319 0.56 -2.2 1,377,954 + Dsui_1319 0.56 -0.1 1,377,954 + -1.1 1,377,954 + -1.8 1,377,954 + Dsui_1319 0.56 -0.3 1,377,954 + -1.8 1,377,954 + -1.3 1,377,954 + Dsui_1319 0.56 -1.0 1,377,954 + Dsui_1319 0.56 -1.0 1,377,954 + Dsui_1319 0.56 -0.5 1,377,954 + Dsui_1319 0.56 +0.9 1,377,954 + -1.1 1,377,954 + Dsui_1319 0.56 -3.6 1,377,954 + Dsui_1319 0.56 -1.3 1,377,954 + Dsui_1319 0.56 -1.3 1,377,957 - Dsui_1319 0.57 +1.4 1,377,957 - Dsui_1319 0.57 +0.8 1,377,957 - Dsui_1319 0.57 +1.8 1,377,957 - Dsui_1319 0.57 +0.5 1,377,957 - Dsui_1319 0.57 +1.1 1,377,959 + Dsui_1319 0.57 -0.5 1,377,959 + Dsui_1319 0.57 -2.0 1,377,962 - Dsui_1319 0.57 +1.7 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +1.4 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +0.4 1,377,962 - Dsui_1319 0.57 +0.7 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +0.7 1,377,962 - Dsui_1319 0.57 +1.2 1,377,962 - Dsui_1319 0.57 +1.1 1,377,962 - Dsui_1319 0.57 +1.0 1,377,962 - Dsui_1319 0.57 +1.3 1,377,962 - Dsui_1319 0.57 +0.8 1,377,962 - Dsui_1319 0.57 +0.5 1,377,962 - Dsui_1319 0.57 +1.6 1,377,962 - Dsui_1319 0.57 +0.6 1,377,964 + Dsui_1319 0.57 +0.8 1,377,967 - Dsui_1319 0.57 +1.2 1,377,967 - Dsui_1319 0.57 +1.2 1,377,967 - Dsui_1319 0.57 +1.3 1,377,967 - Dsui_1319 0.57 +1.4 1,377,967 - Dsui_1319 0.57 +0.7 1,377,967 - Dsui_1319 0.57 +0.3 1,377,967 - Dsui_1319 0.57 +0.7 1,377,972 - Dsui_1319 0.58 +0.7 1,378,025 + Dsui_1319 0.62 -1.4 1,378,036 + Dsui_1319 0.63 -0.1 1,378,036 + Dsui_1319 0.63 -1.2 1,378,044 - Dsui_1319 0.64 +0.7 1,378,113 + Dsui_1319 0.69 -0.7 1,378,141 + Dsui_1319 0.71 -0.0 1,378,141 + Dsui_1319 0.71 -0.3 1,378,160 + -0.1 1,378,175 + Dsui_1319 0.74 -0.6 1,378,184 - Dsui_1319 0.75 +0.8 1,378,193 - Dsui_1319 0.76 +0.7 1,378,200 + Dsui_1319 0.76 -0.7 1,378,206 + Dsui_1319 0.77 -0.4 1,378,215 - Dsui_1319 0.77 +2.0
Or see this region's nucleotide sequence