Strain Fitness in Dechlorosoma suillum PS around Dsui_1219

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1217 and Dsui_1218 are separated by 11 nucleotidesDsui_1218 and Dsui_1219 are separated by 56 nucleotidesDsui_1219 and Dsui_1220 are separated by 136 nucleotides Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123 _1217 Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623 _1218 Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261 _1219 Dsui_1220: Dsui_1220 - gamma-glutamyl phosphate reductase, at 1,275,398 to 1,276,654 _1220 Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -1 0 1 2at 1273.695 kb on - strand, within Dsui_1217at 1273.770 kb on - strand, within Dsui_1217at 1273.787 kb on - strand, within Dsui_1217at 1273.864 kb on + strandat 1274.074 kb on + strandat 1274.315 kb on - strand, within Dsui_1218at 1274.589 kb on + strandat 1274.589 kb on + strandat 1274.670 kb on + strandat 1274.678 kb on - strandat 1274.681 kb on + strandat 1274.725 kb on - strandat 1274.735 kb on - strandat 1274.762 kb on - strand, within Dsui_1219at 1274.900 kb on + strand, within Dsui_1219at 1274.996 kb on + strand, within Dsui_1219at 1275.076 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219at 1275.089 kb on + strand, within Dsui_1219at 1275.150 kb on + strand, within Dsui_1219at 1275.218 kb on + strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.309 kb on - strandat 1275.319 kb on - strandat 1275.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,273,695 - Dsui_1217 0.54 -1.5
1,273,770 - Dsui_1217 0.62 -0.2
1,273,787 - Dsui_1217 0.64 -0.2
1,273,864 + -1.3
1,274,074 + -0.2
1,274,315 - Dsui_1218 0.37 +0.2
1,274,589 + -0.2
1,274,589 + +1.3
1,274,670 + +0.2
1,274,678 - +0.2
1,274,681 + -1.2
1,274,725 - +0.9
1,274,735 - +1.3
1,274,762 - Dsui_1219 0.14 +1.5
1,274,900 + Dsui_1219 0.38 +0.1
1,274,996 + Dsui_1219 0.54 +0.2
1,275,076 + Dsui_1219 0.68 +2.0
1,275,089 + Dsui_1219 0.70 +1.4
1,275,089 + Dsui_1219 0.70 -0.9
1,275,150 + Dsui_1219 0.81 -1.1
1,275,218 + +0.0
1,275,309 - -0.1
1,275,309 - +0.2
1,275,309 - +0.5
1,275,309 - +0.6
1,275,319 - +0.6
1,275,394 + +0.0

Or see this region's nucleotide sequence