Strain Fitness in Dechlorosoma suillum PS around Dsui_1215

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1213 and Dsui_1214 are separated by 40 nucleotidesDsui_1214 and Dsui_1215 are separated by 84 nucleotidesDsui_1215 and Dsui_1216 are separated by 15 nucleotidesDsui_1216 and Dsui_1217 are separated by 64 nucleotides Dsui_1213: Dsui_1213 - putative glycoprotease GCP, at 1,270,477 to 1,271,505 _1213 Dsui_1214: Dsui_1214 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 1,271,546 to 1,272,175 _1214 Dsui_1215: Dsui_1215 - FolB domain protein, at 1,272,260 to 1,272,613 _1215 Dsui_1216: Dsui_1216 - ybaK/ebsC protein, at 1,272,629 to 1,273,135 _1216 Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123 _1217 Position (kb) 1272 1273Strain fitness (log2 ratio) -3 -2 -1 0 1at 1271.486 kb on + strandat 1272.212 kb on - strandat 1272.670 kb on + strandat 1272.671 kb on + strandat 1272.687 kb on - strand, within Dsui_1216at 1272.742 kb on + strand, within Dsui_1216at 1272.779 kb on - strand, within Dsui_1216at 1272.819 kb on - strand, within Dsui_1216at 1272.927 kb on + strand, within Dsui_1216at 1272.994 kb on + strand, within Dsui_1216at 1273.035 kb on - strand, within Dsui_1216at 1273.044 kb on + strand, within Dsui_1216at 1273.052 kb on - strand, within Dsui_1216at 1273.090 kb on - strandat 1273.160 kb on - strandat 1273.258 kb on + strandat 1273.423 kb on + strand, within Dsui_1217at 1273.533 kb on - strand, within Dsui_1217at 1273.536 kb on + strand, within Dsui_1217at 1273.558 kb on + strand, within Dsui_1217at 1273.571 kb on + strand, within Dsui_1217

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,271,486 + +1.0
1,272,212 - -0.9
1,272,670 + +0.5
1,272,671 + -0.1
1,272,687 - Dsui_1216 0.11 -2.7
1,272,742 + Dsui_1216 0.22 -0.1
1,272,779 - Dsui_1216 0.30 +0.2
1,272,819 - Dsui_1216 0.37 +0.3
1,272,927 + Dsui_1216 0.59 -1.0
1,272,994 + Dsui_1216 0.72 -0.1
1,273,035 - Dsui_1216 0.80 +0.2
1,273,044 + Dsui_1216 0.82 +0.4
1,273,052 - Dsui_1216 0.83 +0.8
1,273,090 - -0.0
1,273,160 - +0.4
1,273,258 + +0.4
1,273,423 + Dsui_1217 0.24 -2.7
1,273,533 - Dsui_1217 0.36 -0.2
1,273,536 + Dsui_1217 0.36 -0.9
1,273,558 + Dsui_1217 0.39 -1.7
1,273,571 + Dsui_1217 0.40 -3.0

Or see this region's nucleotide sequence