Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1045 and Dsui_1046 are separated by 4 nucleotides Dsui_1046 and Dsui_1047 are separated by 3 nucleotides Dsui_1047 and Dsui_1048 are separated by 328 nucleotides
Dsui_1045: Dsui_1045 - hypothetical protein, at 1,078,872 to 1,079,318
_1045
Dsui_1046: Dsui_1046 - hypothetical protein, at 1,079,323 to 1,080,141
_1046
Dsui_1047: Dsui_1047 - Rhodanese-related sulfurtransferase, at 1,080,145 to 1,080,597
_1047
Dsui_1048: Dsui_1048 - glutamine synthetase, type I, at 1,080,926 to 1,082,338
_1048
Position (kb)
1080
1081 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1079.185 kb on - strand, within Dsui_1045 at 1079.185 kb on - strand, within Dsui_1045 at 1079.245 kb on + strand, within Dsui_1045 at 1079.264 kb on + strand, within Dsui_1045 at 1079.315 kb on - strand at 1079.361 kb on + strand at 1079.362 kb on + strand at 1079.362 kb on + strand at 1079.362 kb on + strand at 1079.362 kb on + strand at 1079.362 kb on + strand at 1079.370 kb on - strand at 1079.370 kb on - strand at 1079.430 kb on + strand, within Dsui_1046 at 1079.446 kb on + strand at 1079.591 kb on - strand, within Dsui_1046 at 1079.624 kb on + strand, within Dsui_1046 at 1079.624 kb on + strand at 1079.654 kb on + strand, within Dsui_1046 at 1079.654 kb on + strand, within Dsui_1046 at 1079.654 kb on + strand, within Dsui_1046 at 1079.664 kb on - strand, within Dsui_1046 at 1079.694 kb on - strand, within Dsui_1046 at 1079.752 kb on + strand, within Dsui_1046 at 1079.754 kb on - strand at 1079.776 kb on - strand, within Dsui_1046 at 1079.781 kb on + strand, within Dsui_1046 at 1079.837 kb on + strand, within Dsui_1046 at 1079.912 kb on - strand, within Dsui_1046 at 1080.143 kb on + strand at 1080.241 kb on + strand, within Dsui_1047 at 1080.249 kb on + strand, within Dsui_1047 at 1080.250 kb on - strand, within Dsui_1047 at 1080.386 kb on + strand, within Dsui_1047 at 1080.434 kb on + strand, within Dsui_1047 at 1080.442 kb on - strand, within Dsui_1047 at 1080.442 kb on - strand, within Dsui_1047 at 1080.447 kb on - strand, within Dsui_1047 at 1080.457 kb on - strand, within Dsui_1047 at 1080.464 kb on + strand, within Dsui_1047 at 1080.506 kb on - strand, within Dsui_1047 at 1080.530 kb on + strand, within Dsui_1047 at 1080.538 kb on - strand, within Dsui_1047 at 1080.554 kb on + strand at 1080.630 kb on + strand at 1080.681 kb on + strand at 1080.705 kb on + strand at 1080.705 kb on + strand at 1080.713 kb on - strand at 1080.713 kb on - strand at 1080.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 1,079,185 - Dsui_1045 0.70 -2.3 1,079,185 - Dsui_1045 0.70 -0.1 1,079,245 + Dsui_1045 0.83 +0.2 1,079,264 + Dsui_1045 0.88 -0.7 1,079,315 - -0.5 1,079,361 + -0.3 1,079,362 + -0.7 1,079,362 + -0.6 1,079,362 + -0.3 1,079,362 + +0.2 1,079,362 + +0.7 1,079,370 - -0.4 1,079,370 - +0.8 1,079,430 + Dsui_1046 0.13 -1.6 1,079,446 + +2.0 1,079,591 - Dsui_1046 0.33 -2.1 1,079,624 + Dsui_1046 0.37 +0.4 1,079,624 + -0.4 1,079,654 + Dsui_1046 0.40 -1.1 1,079,654 + Dsui_1046 0.40 +2.7 1,079,654 + Dsui_1046 0.40 +1.1 1,079,664 - Dsui_1046 0.42 -0.3 1,079,694 - Dsui_1046 0.45 -1.1 1,079,752 + Dsui_1046 0.52 -0.2 1,079,754 - +1.0 1,079,776 - Dsui_1046 0.55 +0.3 1,079,781 + Dsui_1046 0.56 -1.0 1,079,837 + Dsui_1046 0.63 +0.6 1,079,912 - Dsui_1046 0.72 -0.7 1,080,143 + -1.6 1,080,241 + Dsui_1047 0.21 +1.5 1,080,249 + Dsui_1047 0.23 +0.5 1,080,250 - Dsui_1047 0.23 +1.0 1,080,386 + Dsui_1047 0.53 -0.6 1,080,434 + Dsui_1047 0.64 -0.4 1,080,442 - Dsui_1047 0.66 +0.7 1,080,442 - Dsui_1047 0.66 -0.0 1,080,447 - Dsui_1047 0.67 -0.2 1,080,457 - Dsui_1047 0.69 -1.4 1,080,464 + Dsui_1047 0.70 +0.1 1,080,506 - Dsui_1047 0.80 +1.0 1,080,530 + Dsui_1047 0.85 +0.1 1,080,538 - Dsui_1047 0.87 -0.0 1,080,554 + -0.5 1,080,630 + -1.3 1,080,681 + +0.6 1,080,705 + +0.2 1,080,705 + +0.5 1,080,713 - +0.2 1,080,713 - -2.2 1,080,852 - -2.0
Or see this region's nucleotide sequence