Strain Fitness in Dechlorosoma suillum PS around Dsui_0755

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0753 and Dsui_0754 are separated by 130 nucleotidesDsui_0754 and Dsui_0755 are separated by 133 nucleotidesDsui_0755 and Dsui_0756 are separated by 142 nucleotidesDsui_0756 and Dsui_0757 are separated by 43 nucleotides Dsui_0753: Dsui_0753 - ATPase component of ABC transporters with duplicated ATPase domain, at 752,234 to 753,850 _0753 Dsui_0754: Dsui_0754 - hypothetical protein, at 753,981 to 754,355 _0754 Dsui_0755: Dsui_0755 - hypothetical protein, at 754,489 to 755,103 _0755 Dsui_0756: Dsui_0756 - hypothetical protein, at 755,246 to 755,941 _0756 Dsui_0757: Dsui_0757 - HD-GYP domain-containing protein, at 755,985 to 757,190 _0757 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.559 kb on - strand, within Dsui_0753at 753.559 kb on - strand, within Dsui_0753at 753.693 kb on - strandat 753.703 kb on - strandat 753.704 kb on - strandat 753.714 kb on - strandat 753.727 kb on - strandat 754.005 kb on - strandat 754.016 kb on + strandat 754.030 kb on + strand, within Dsui_0754at 754.030 kb on + strand, within Dsui_0754at 754.036 kb on + strand, within Dsui_0754at 754.084 kb on + strand, within Dsui_0754at 754.084 kb on + strand, within Dsui_0754at 754.085 kb on - strandat 754.100 kb on - strand, within Dsui_0754at 754.100 kb on - strand, within Dsui_0754at 754.122 kb on - strand, within Dsui_0754at 754.185 kb on - strand, within Dsui_0754at 754.226 kb on + strand, within Dsui_0754at 754.272 kb on + strand, within Dsui_0754at 754.346 kb on + strandat 754.365 kb on - strandat 754.421 kb on + strandat 754.438 kb on - strandat 754.458 kb on - strandat 754.492 kb on + strandat 754.493 kb on - strandat 754.500 kb on - strandat 754.500 kb on - strandat 754.549 kb on + strandat 754.549 kb on + strandat 754.583 kb on + strand, within Dsui_0755at 754.583 kb on + strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.602 kb on - strand, within Dsui_0755at 754.638 kb on + strand, within Dsui_0755at 754.648 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.663 kb on - strand, within Dsui_0755at 754.781 kb on + strand, within Dsui_0755at 754.789 kb on - strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.857 kb on + strand, within Dsui_0755at 754.936 kb on - strand, within Dsui_0755at 754.938 kb on + strand, within Dsui_0755at 755.007 kb on - strand, within Dsui_0755at 755.080 kb on + strandat 755.098 kb on + strandat 755.098 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.188 kb on + strandat 755.204 kb on + strandat 755.261 kb on - strandat 755.276 kb on + strandat 755.328 kb on + strandat 755.435 kb on - strand, within Dsui_0756at 755.450 kb on - strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.672 kb on - strand, within Dsui_0756at 755.712 kb on + strand, within Dsui_0756at 755.769 kb on - strand, within Dsui_0756at 755.796 kb on + strand, within Dsui_0756at 755.817 kb on + strandat 755.826 kb on + strand, within Dsui_0756at 755.973 kb on + strandat 755.981 kb on - strandat 756.016 kb on + strandat 756.059 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
753,559 - Dsui_0753 0.82 +0.5
753,559 - Dsui_0753 0.82 -1.1
753,693 - +1.3
753,703 - +0.7
753,704 - +0.8
753,714 - -2.0
753,727 - +0.2
754,005 - +0.7
754,016 + +0.7
754,030 + Dsui_0754 0.13 +0.7
754,030 + Dsui_0754 0.13 +0.0
754,036 + Dsui_0754 0.15 -0.7
754,084 + Dsui_0754 0.27 +0.5
754,084 + Dsui_0754 0.27 -0.4
754,085 - +0.4
754,100 - Dsui_0754 0.32 -0.1
754,100 - Dsui_0754 0.32 -0.1
754,122 - Dsui_0754 0.38 +0.3
754,185 - Dsui_0754 0.54 +0.7
754,226 + Dsui_0754 0.65 -0.3
754,272 + Dsui_0754 0.78 +0.0
754,346 + -0.3
754,365 - +2.0
754,421 + +0.3
754,438 - +1.0
754,458 - -0.3
754,492 + -0.2
754,493 - +0.2
754,500 - +1.2
754,500 - -1.2
754,549 + -2.8
754,549 + +0.9
754,583 + Dsui_0755 0.15 +1.3
754,583 + Dsui_0755 0.15 +2.3
754,589 - Dsui_0755 0.16 +1.2
754,589 - Dsui_0755 0.16 +0.5
754,591 - Dsui_0755 0.17 +0.4
754,591 - Dsui_0755 0.17 +2.6
754,602 - Dsui_0755 0.18 +0.1
754,638 + Dsui_0755 0.24 +0.6
754,648 + Dsui_0755 0.26 -0.5
754,655 + Dsui_0755 0.27 +0.0
754,655 + Dsui_0755 0.27 -0.5
754,663 - Dsui_0755 0.28 +0.4
754,781 + Dsui_0755 0.47 +0.8
754,789 - Dsui_0755 0.49 +0.2
754,832 + Dsui_0755 0.56 +0.8
754,832 + Dsui_0755 0.56 -0.1
754,840 - Dsui_0755 0.57 +0.6
754,840 - Dsui_0755 0.57 +0.6
754,857 + Dsui_0755 0.60 -0.3
754,936 - Dsui_0755 0.73 +0.2
754,938 + Dsui_0755 0.73 +0.1
755,007 - Dsui_0755 0.84 +0.7
755,080 + -1.1
755,098 + +2.3
755,098 + +0.5
755,103 + +1.0
755,103 + +1.7
755,103 + -0.5
755,103 + -0.4
755,188 + +1.1
755,204 + -0.5
755,261 - -0.7
755,276 + +0.8
755,328 + -2.4
755,435 - Dsui_0756 0.27 -0.4
755,450 - Dsui_0756 0.29 -1.5
755,532 + Dsui_0756 0.41 -0.4
755,532 + Dsui_0756 0.41 -0.4
755,540 - Dsui_0756 0.42 +0.5
755,540 - Dsui_0756 0.42 -2.7
755,672 - Dsui_0756 0.61 -0.2
755,712 + Dsui_0756 0.67 -1.6
755,769 - Dsui_0756 0.75 +0.2
755,796 + Dsui_0756 0.79 -0.6
755,817 + +0.2
755,826 + Dsui_0756 0.83 -0.7
755,973 + -1.9
755,981 - +0.0
756,016 + -1.2
756,059 - +0.7

Or see this region's nucleotide sequence