Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0592 and Dsui_0593 are separated by 48 nucleotides Dsui_0593 and Dsui_0594 overlap by 8 nucleotides Dsui_0594 and Dsui_0595 overlap by 8 nucleotides Dsui_0595 and Dsui_0596 overlap by 8 nucleotides
Dsui_0592: Dsui_0592 - putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon, at 589,652 to 591,292
_0592
Dsui_0593: Dsui_0593 - putative transcriptional regulator, at 591,341 to 591,901
_0593
Dsui_0594: Dsui_0594 - RNAse H-fold protein YqgF, at 591,894 to 592,370
_0594
Dsui_0595: Dsui_0595 - pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 592,363 to 592,884
_0595
Dsui_0596: Dsui_0596 - aspartate carbamoyltransferase, at 592,877 to 593,860
_0596
Position (kb) 591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.661 kb on + strand, within Dsui_0592 at 590.669 kb on - strand, within Dsui_0592 at 590.845 kb on + strand, within Dsui_0592 at 591.026 kb on + strand, within Dsui_0592 at 591.130 kb on - strand at 591.161 kb on + strand at 591.161 kb on - strand at 591.169 kb on - strand at 591.204 kb on - strand at 591.236 kb on - strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.348 kb on + strand at 591.466 kb on + strand, within Dsui_0593 at 591.586 kb on - strand, within Dsui_0593 at 591.647 kb on + strand, within Dsui_0593 at 591.721 kb on + strand, within Dsui_0593 at 591.724 kb on - strand, within Dsui_0593 at 591.895 kb on + strand at 591.896 kb on + strand at 592.472 kb on + strand, within Dsui_0595 at 592.604 kb on + strand, within Dsui_0595 at 592.644 kb on + strand, within Dsui_0595 at 592.656 kb on + strand, within Dsui_0595
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 590,661 + Dsui_0592 0.61 +0.2 590,669 - Dsui_0592 0.62 -1.4 590,845 + Dsui_0592 0.73 +0.2 591,026 + Dsui_0592 0.84 +1.2 591,130 - -0.4 591,161 + +0.1 591,161 - -0.1 591,169 - +0.2 591,204 - -1.2 591,236 - +0.2 591,338 + +0.8 591,338 + +0.7 591,338 + +0.1 591,338 + +0.3 591,338 + +1.0 591,338 + +0.1 591,346 - -2.5 591,346 - -0.5 591,346 - -1.4 591,346 - -0.5 591,346 - -1.4 591,346 - -1.4 591,346 - -2.8 591,346 - -1.1 591,346 - -1.2 591,348 + +0.6 591,466 + Dsui_0593 0.22 +1.3 591,586 - Dsui_0593 0.44 -0.5 591,647 + Dsui_0593 0.55 +1.4 591,721 + Dsui_0593 0.68 +1.0 591,724 - Dsui_0593 0.68 -0.2 591,895 + -1.0 591,896 + +0.4 592,472 + Dsui_0595 0.21 +0.9 592,604 + Dsui_0595 0.46 +0.8 592,644 + Dsui_0595 0.54 +0.4 592,656 + Dsui_0595 0.56 +0.8
Or see this region's nucleotide sequence