Strain Fitness in Dechlorosoma suillum PS around Dsui_0390

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0389 and Dsui_0390 are separated by 6 nucleotidesDsui_0390 and Dsui_0391 overlap by 4 nucleotides Dsui_0389: Dsui_0389 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 387,629 to 388,996 _0389 Dsui_0390: Dsui_0390 - ribosomal protein L11 methyltransferase, at 389,003 to 389,890 _0390 Dsui_0391: Dsui_0391 - Protein of unknown function (DUF3426), at 389,887 to 390,879 _0391 Position (kb) 389 390Strain fitness (log2 ratio) -2 -1 0 1 2at 389.051 kb on + strandat 389.128 kb on - strand, within Dsui_0390at 389.176 kb on - strand, within Dsui_0390at 389.205 kb on - strand, within Dsui_0390at 389.301 kb on + strand, within Dsui_0390at 389.309 kb on - strand, within Dsui_0390at 389.323 kb on + strand, within Dsui_0390at 389.350 kb on + strand, within Dsui_0390at 389.455 kb on + strand, within Dsui_0390at 389.468 kb on - strandat 389.611 kb on + strand, within Dsui_0390at 389.619 kb on - strand, within Dsui_0390at 389.706 kb on - strand, within Dsui_0390at 389.739 kb on - strand, within Dsui_0390at 389.741 kb on + strand, within Dsui_0390at 389.781 kb on - strand, within Dsui_0390at 389.904 kb on + strandat 389.912 kb on - strandat 389.927 kb on + strandat 389.947 kb on - strandat 389.947 kb on - strandat 389.957 kb on - strandat 389.957 kb on - strandat 389.957 kb on - strandat 390.139 kb on - strand, within Dsui_0391at 390.192 kb on + strand, within Dsui_0391

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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389,051 + +0.9
389,128 - Dsui_0390 0.14 -0.8
389,176 - Dsui_0390 0.19 -0.4
389,205 - Dsui_0390 0.23 +0.5
389,301 + Dsui_0390 0.34 +1.0
389,309 - Dsui_0390 0.34 -0.5
389,323 + Dsui_0390 0.36 +0.3
389,350 + Dsui_0390 0.39 +0.6
389,455 + Dsui_0390 0.51 +0.7
389,468 - -2.3
389,611 + Dsui_0390 0.68 +0.6
389,619 - Dsui_0390 0.69 +0.2
389,706 - Dsui_0390 0.79 -0.7
389,739 - Dsui_0390 0.83 -0.0
389,741 + Dsui_0390 0.83 +1.4
389,781 - Dsui_0390 0.88 +1.0
389,904 + +0.3
389,912 - +1.1
389,927 + +1.0
389,947 - +0.2
389,947 - +0.0
389,957 - +0.2
389,957 - -1.9
389,957 - +1.6
390,139 - Dsui_0391 0.25 +2.2
390,192 + Dsui_0391 0.31 +1.0

Or see this region's nucleotide sequence