Strain Fitness in Dechlorosoma suillum PS around Dsui_0338

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0335 and Dsui_0336 are separated by 11 nucleotidesDsui_0336 and Dsui_0337 are separated by 98 nucleotidesDsui_0337 and Dsui_0338 are separated by 79 nucleotidesDsui_0338 and Dsui_0339 are separated by 27 nucleotides Dsui_0335: Dsui_0335 - 30S ribosomal protein S11, at 343,762 to 344,151 _0335 Dsui_0336: Dsui_0336 - 30S ribosomal protein S13, at 344,163 to 344,525 _0336 Dsui_0337: Dsui_0337 - ribosomal protein L36, bacterial type, at 344,624 to 344,737 _0337 Dsui_0338: Dsui_0338 - translation initiation factor IF-1, at 344,817 to 345,035 _0338 Dsui_0339: Dsui_0339 - preprotein translocase, SecY subunit, at 345,063 to 346,388 _0339 Position (kb) 344 345 346Strain fitness (log2 ratio) -1 0 1 2at 344.754 kb on - strandat 344.805 kb on - strandat 344.855 kb on - strand, within Dsui_0338at 344.968 kb on - strand, within Dsui_0338at 344.988 kb on - strand, within Dsui_0338at 345.040 kb on + strandat 345.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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344,754 - -1.5
344,805 - -0.2
344,855 - Dsui_0338 0.17 +2.0
344,968 - Dsui_0338 0.69 +1.8
344,988 - Dsui_0338 0.78 +1.7
345,040 + +0.8
345,048 - +1.8

Or see this region's nucleotide sequence