Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19335

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19330 and CSW01_19335 are separated by 100 nucleotidesCSW01_19335 and CSW01_19340 are separated by 133 nucleotides CSW01_19330: CSW01_19330 - gfo/Idh/MocA family oxidoreductase, at 997,011 to 997,946 _19330 CSW01_19335: CSW01_19335 - MBL fold metallo-hydrolase, at 998,047 to 998,925 _19335 CSW01_19340: CSW01_19340 - glycerol kinase, at 999,059 to 999,982 _19340 Position (kb) 998 999Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 997.129 kb on + strand, within CSW01_19330at 997.131 kb on + strand, within CSW01_19330at 997.153 kb on + strand, within CSW01_19330at 997.191 kb on + strand, within CSW01_19330at 997.195 kb on - strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.211 kb on - strand, within CSW01_19330at 997.224 kb on + strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330at 997.374 kb on + strand, within CSW01_19330at 997.383 kb on - strand, within CSW01_19330at 997.416 kb on + strand, within CSW01_19330at 997.434 kb on - strand, within CSW01_19330at 997.480 kb on - strand, within CSW01_19330at 997.520 kb on + strand, within CSW01_19330at 997.525 kb on + strand, within CSW01_19330at 997.533 kb on - strand, within CSW01_19330at 997.558 kb on + strand, within CSW01_19330at 997.582 kb on + strand, within CSW01_19330at 997.590 kb on - strand, within CSW01_19330at 997.669 kb on + strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.818 kb on + strand, within CSW01_19330at 997.835 kb on + strand, within CSW01_19330at 997.941 kb on + strandat 997.941 kb on + strandat 997.947 kb on + strandat 997.948 kb on - strandat 997.949 kb on - strandat 997.970 kb on - strandat 997.975 kb on - strandat 997.984 kb on - strandat 997.986 kb on + strandat 997.986 kb on + strandat 997.993 kb on + strandat 997.993 kb on + strandat 997.994 kb on - strandat 998.076 kb on - strandat 998.081 kb on - strandat 998.093 kb on - strandat 998.093 kb on - strandat 998.111 kb on + strandat 998.142 kb on + strand, within CSW01_19335at 998.159 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.172 kb on - strand, within CSW01_19335at 998.212 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.287 kb on + strand, within CSW01_19335at 998.301 kb on - strand, within CSW01_19335at 998.339 kb on + strand, within CSW01_19335at 998.347 kb on - strand, within CSW01_19335at 998.374 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.528 kb on - strand, within CSW01_19335at 998.540 kb on + strand, within CSW01_19335at 998.566 kb on + strand, within CSW01_19335at 998.566 kb on - strand, within CSW01_19335at 998.587 kb on + strand, within CSW01_19335at 998.595 kb on - strand, within CSW01_19335at 998.617 kb on + strand, within CSW01_19335at 998.662 kb on + strand, within CSW01_19335at 998.667 kb on + strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.728 kb on - strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.813 kb on + strand, within CSW01_19335at 998.814 kb on + strand, within CSW01_19335at 998.822 kb on - strand, within CSW01_19335at 998.866 kb on - strandat 998.876 kb on - strandat 998.945 kb on + strandat 998.945 kb on + strandat 998.953 kb on - strandat 999.012 kb on + strandat 999.012 kb on + strandat 999.020 kb on - strandat 999.034 kb on + strandat 999.040 kb on - strandat 999.045 kb on + strandat 999.136 kb on - strandat 999.173 kb on - strand, within CSW01_19340at 999.213 kb on + strand, within CSW01_19340at 999.349 kb on + strand, within CSW01_19340at 999.434 kb on - strand, within CSW01_19340at 999.434 kb on - strand, within CSW01_19340at 999.436 kb on + strand, within CSW01_19340at 999.442 kb on + strand, within CSW01_19340at 999.446 kb on + strand, within CSW01_19340at 999.488 kb on - strand, within CSW01_19340at 999.488 kb on - strand, within CSW01_19340at 999.517 kb on - strand, within CSW01_19340at 999.703 kb on - strand, within CSW01_19340at 999.738 kb on - strand, within CSW01_19340at 999.743 kb on - strand, within CSW01_19340at 999.775 kb on - strand, within CSW01_19340at 999.837 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.888 kb on + strand, within CSW01_19340at 999.896 kb on - strandat 999.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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997,129 + CSW01_19330 0.13 +2.1
997,131 + CSW01_19330 0.13 -3.8
997,153 + CSW01_19330 0.15 +0.3
997,191 + CSW01_19330 0.19 -3.1
997,195 - CSW01_19330 0.20 +0.6
997,203 + CSW01_19330 0.21 +1.4
997,203 + CSW01_19330 0.21 +0.1
997,211 - CSW01_19330 0.21 -2.5
997,224 + CSW01_19330 0.23 +1.1
997,232 - CSW01_19330 0.24 +1.7
997,232 - CSW01_19330 0.24 -0.8
997,374 + CSW01_19330 0.39 +1.2
997,383 - CSW01_19330 0.40 +1.3
997,416 + CSW01_19330 0.43 -1.0
997,434 - CSW01_19330 0.45 -1.1
997,480 - CSW01_19330 0.50 -0.2
997,520 + CSW01_19330 0.54 -1.3
997,525 + CSW01_19330 0.55 -0.4
997,533 - CSW01_19330 0.56 -0.2
997,558 + CSW01_19330 0.58 +1.6
997,582 + CSW01_19330 0.61 -1.5
997,590 - CSW01_19330 0.62 +0.0
997,669 + CSW01_19330 0.70 +0.5
997,677 - CSW01_19330 0.71 -0.5
997,677 - CSW01_19330 0.71 +0.2
997,677 - CSW01_19330 0.71 +0.3
997,818 + CSW01_19330 0.86 -1.4
997,835 + CSW01_19330 0.88 +1.0
997,941 + -3.6
997,941 + +3.4
997,947 + +0.5
997,948 - -2.0
997,949 - +0.8
997,970 - +0.2
997,975 - +1.2
997,984 - -0.7
997,986 + +1.4
997,986 + +1.3
997,993 + -2.4
997,993 + -2.4
997,994 - +1.5
998,076 - -1.4
998,081 - +0.4
998,093 - +1.2
998,093 - +0.1
998,111 + -1.2
998,142 + CSW01_19335 0.11 -1.2
998,159 + CSW01_19335 0.13 +0.1
998,164 + CSW01_19335 0.13 -3.1
998,164 + CSW01_19335 0.13 +0.8
998,172 - CSW01_19335 0.14 +0.6
998,212 + CSW01_19335 0.19 +0.9
998,247 + CSW01_19335 0.23 -1.2
998,247 + CSW01_19335 0.23 -0.6
998,287 + CSW01_19335 0.27 -0.2
998,301 - CSW01_19335 0.29 +0.9
998,339 + CSW01_19335 0.33 +0.1
998,347 - CSW01_19335 0.34 +0.4
998,374 + CSW01_19335 0.37 +0.8
998,421 + CSW01_19335 0.43 +0.5
998,421 + CSW01_19335 0.43 -2.7
998,528 - CSW01_19335 0.55 +0.7
998,540 + CSW01_19335 0.56 -2.8
998,566 + CSW01_19335 0.59 -0.9
998,566 - CSW01_19335 0.59 -4.1
998,587 + CSW01_19335 0.61 -0.6
998,595 - CSW01_19335 0.62 -0.3
998,617 + CSW01_19335 0.65 +1.6
998,662 + CSW01_19335 0.70 -0.3
998,667 + CSW01_19335 0.71 -2.2
998,670 - CSW01_19335 0.71 -0.1
998,670 - CSW01_19335 0.71 +2.1
998,712 + CSW01_19335 0.76 -2.7
998,712 + CSW01_19335 0.76 -1.8
998,720 - CSW01_19335 0.77 -0.7
998,720 - CSW01_19335 0.77 -2.5
998,728 - CSW01_19335 0.77 -0.7
998,778 + CSW01_19335 0.83 +0.7
998,778 + CSW01_19335 0.83 -0.3
998,786 - CSW01_19335 0.84 -0.4
998,786 - CSW01_19335 0.84 -1.5
998,813 + CSW01_19335 0.87 +0.1
998,814 + CSW01_19335 0.87 +0.1
998,822 - CSW01_19335 0.88 -1.8
998,866 - +2.1
998,876 - -1.8
998,945 + -2.5
998,945 + -2.1
998,953 - -2.0
999,012 + -2.4
999,012 + -2.9
999,020 - -2.6
999,034 + -1.9
999,040 - +0.4
999,045 + -0.0
999,136 - +0.9
999,173 - CSW01_19340 0.12 +1.8
999,213 + CSW01_19340 0.17 +1.7
999,349 + CSW01_19340 0.31 +0.8
999,434 - CSW01_19340 0.41 +0.7
999,434 - CSW01_19340 0.41 +0.8
999,436 + CSW01_19340 0.41 -3.2
999,442 + CSW01_19340 0.41 +0.2
999,446 + CSW01_19340 0.42 +1.0
999,488 - CSW01_19340 0.46 -0.9
999,488 - CSW01_19340 0.46 +0.4
999,517 - CSW01_19340 0.50 -0.4
999,703 - CSW01_19340 0.70 +0.7
999,738 - CSW01_19340 0.73 -1.5
999,743 - CSW01_19340 0.74 +0.7
999,775 - CSW01_19340 0.77 -2.1
999,837 + CSW01_19340 0.84 +1.0
999,888 + CSW01_19340 0.90 +2.3
999,888 + CSW01_19340 0.90 +0.8
999,888 + CSW01_19340 0.90 -2.1
999,888 + CSW01_19340 0.90 -1.2
999,896 - +1.4
999,896 - -3.3

Or see this region's nucleotide sequence