Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19245 and CSW01_19250 are separated by 114 nucleotides CSW01_19250 and CSW01_19255 are separated by 267 nucleotides
CSW01_19245: CSW01_19245 - methyl-accepting chemotaxis protein, at 978,383 to 980,014
_19245
CSW01_19250: CSW01_19250 - hypothetical protein, at 980,129 to 980,536
_19250
CSW01_19255: CSW01_19255 - carbohydrate ABC transporter substrate-binding protein, at 980,804 to 982,180
_19255
Position (kb) 980
981 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 979.209 kb on + strand, within CSW01_19245 at 979.403 kb on - strand, within CSW01_19245 at 979.463 kb on - strand, within CSW01_19245 at 979.463 kb on - strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.877 kb on - strand at 979.930 kb on - strand at 979.933 kb on + strand at 979.941 kb on - strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.951 kb on - strand at 979.953 kb on + strand at 980.002 kb on - strand at 980.237 kb on - strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.410 kb on + strand, within CSW01_19250 at 980.554 kb on + strand at 980.564 kb on + strand at 980.642 kb on + strand at 980.657 kb on - strand at 980.708 kb on - strand at 980.708 kb on - strand at 980.738 kb on + strand at 980.739 kb on - strand at 980.772 kb on + strand at 980.772 kb on + strand at 980.780 kb on - strand at 980.815 kb on + strand at 980.825 kb on - strand at 980.827 kb on + strand at 980.904 kb on + strand at 980.917 kb on + strand at 980.927 kb on - strand at 980.935 kb on - strand at 980.979 kb on - strand, within CSW01_19255 at 981.148 kb on + strand, within CSW01_19255 at 981.153 kb on + strand, within CSW01_19255 at 981.161 kb on - strand, within CSW01_19255 at 981.161 kb on - strand, within CSW01_19255 at 981.171 kb on - strand, within CSW01_19255 at 981.171 kb on - strand, within CSW01_19255 at 981.210 kb on + strand, within CSW01_19255 at 981.210 kb on + strand, within CSW01_19255 at 981.218 kb on - strand, within CSW01_19255 at 981.218 kb on - strand, within CSW01_19255 at 981.341 kb on - strand, within CSW01_19255 at 981.523 kb on + strand, within CSW01_19255 at 981.531 kb on - strand, within CSW01_19255
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 979,209 + CSW01_19245 0.51 +0.3 979,403 - CSW01_19245 0.62 -2.2 979,463 - CSW01_19245 0.66 -0.3 979,463 - CSW01_19245 0.66 -0.8 979,752 + CSW01_19245 0.84 +1.3 979,752 + CSW01_19245 0.84 -1.0 979,752 + CSW01_19245 0.84 +0.1 979,752 + CSW01_19245 0.84 -2.0 979,752 + CSW01_19245 0.84 +0.6 979,760 - CSW01_19245 0.84 -3.0 979,760 - CSW01_19245 0.84 -0.0 979,760 - CSW01_19245 0.84 -3.7 979,877 - +1.3 979,930 - +0.5 979,933 + -3.1 979,941 - -0.6 979,943 + -0.6 979,943 + -1.2 979,943 + +0.1 979,951 - -0.7 979,953 + +1.4 980,002 - -0.2 980,237 - CSW01_19250 0.26 +2.6 980,369 + CSW01_19250 0.59 -2.0 980,369 + CSW01_19250 0.59 +0.2 980,410 + CSW01_19250 0.69 -0.6 980,554 + +3.0 980,564 + +0.4 980,642 + +0.7 980,657 - +0.5 980,708 - -0.6 980,708 - -1.2 980,738 + -2.6 980,739 - +1.0 980,772 + -1.9 980,772 + +0.4 980,780 - -1.4 980,815 + +0.2 980,825 - -0.3 980,827 + -0.6 980,904 + +0.4 980,917 + -0.1 980,927 - +0.3 980,935 - -4.1 980,979 - CSW01_19255 0.13 +1.3 981,148 + CSW01_19255 0.25 -1.0 981,153 + CSW01_19255 0.25 +1.0 981,161 - CSW01_19255 0.26 +0.5 981,161 - CSW01_19255 0.26 +1.5 981,171 - CSW01_19255 0.27 -3.6 981,171 - CSW01_19255 0.27 -2.7 981,210 + CSW01_19255 0.29 +0.2 981,210 + CSW01_19255 0.29 -1.8 981,218 - CSW01_19255 0.30 +0.2 981,218 - CSW01_19255 0.30 +1.2 981,341 - CSW01_19255 0.39 +0.8 981,523 + CSW01_19255 0.52 +0.6 981,531 - CSW01_19255 0.53 -1.6
Or see this region's nucleotide sequence