Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19235 and CSW01_19240 are separated by 134 nucleotides CSW01_19240 and CSW01_19245 are separated by 459 nucleotides
CSW01_19235: CSW01_19235 - glycogen debranching enzyme GlgX, at 975,567 to 977,537
_19235
CSW01_19240: CSW01_19240 - DUF2999 domain-containing protein, at 977,672 to 977,923
_19240
CSW01_19245: CSW01_19245 - methyl-accepting chemotaxis protein, at 978,383 to 980,014
_19245
Position (kb) 977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 976.704 kb on - strand, within CSW01_19235 at 976.709 kb on - strand, within CSW01_19235 at 976.754 kb on + strand, within CSW01_19235 at 976.754 kb on + strand, within CSW01_19235 at 976.754 kb on + strand, within CSW01_19235 at 976.762 kb on - strand, within CSW01_19235 at 976.762 kb on - strand, within CSW01_19235 at 976.775 kb on + strand, within CSW01_19235 at 976.834 kb on + strand, within CSW01_19235 at 976.834 kb on + strand, within CSW01_19235 at 976.834 kb on + strand, within CSW01_19235 at 976.834 kb on + strand, within CSW01_19235 at 976.842 kb on - strand, within CSW01_19235 at 976.842 kb on - strand, within CSW01_19235 at 976.842 kb on - strand, within CSW01_19235 at 976.919 kb on - strand, within CSW01_19235 at 976.934 kb on - strand, within CSW01_19235 at 976.967 kb on - strand, within CSW01_19235 at 976.985 kb on + strand, within CSW01_19235 at 977.048 kb on - strand, within CSW01_19235 at 977.084 kb on + strand, within CSW01_19235 at 977.086 kb on - strand, within CSW01_19235 at 977.451 kb on - strand at 977.453 kb on + strand at 977.464 kb on - strand at 977.502 kb on + strand at 977.569 kb on + strand at 977.594 kb on - strand at 977.599 kb on - strand at 977.765 kb on + strand, within CSW01_19240 at 977.829 kb on - strand, within CSW01_19240 at 977.856 kb on - strand, within CSW01_19240 at 977.955 kb on - strand at 978.050 kb on - strand at 978.180 kb on - strand at 978.180 kb on - strand at 978.259 kb on + strand at 978.259 kb on + strand at 978.259 kb on + strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.288 kb on + strand at 978.379 kb on + strand at 978.379 kb on + strand at 978.563 kb on - strand, within CSW01_19245 at 978.571 kb on - strand, within CSW01_19245 at 978.645 kb on - strand, within CSW01_19245 at 978.685 kb on - strand, within CSW01_19245 at 978.685 kb on - strand, within CSW01_19245 at 978.708 kb on - strand, within CSW01_19245 at 978.708 kb on - strand, within CSW01_19245 at 978.834 kb on + strand, within CSW01_19245 at 978.915 kb on + strand, within CSW01_19245
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 976,704 - CSW01_19235 0.58 +0.4 976,709 - CSW01_19235 0.58 -1.8 976,754 + CSW01_19235 0.60 -1.2 976,754 + CSW01_19235 0.60 -0.2 976,754 + CSW01_19235 0.60 -2.7 976,762 - CSW01_19235 0.61 -1.7 976,762 - CSW01_19235 0.61 -3.1 976,775 + CSW01_19235 0.61 -1.0 976,834 + CSW01_19235 0.64 +0.8 976,834 + CSW01_19235 0.64 -3.3 976,834 + CSW01_19235 0.64 +0.6 976,834 + CSW01_19235 0.64 +0.2 976,842 - CSW01_19235 0.65 +1.3 976,842 - CSW01_19235 0.65 -1.7 976,842 - CSW01_19235 0.65 +1.1 976,919 - CSW01_19235 0.69 -0.2 976,934 - CSW01_19235 0.69 -2.7 976,967 - CSW01_19235 0.71 +0.2 976,985 + CSW01_19235 0.72 -0.0 977,048 - CSW01_19235 0.75 -1.2 977,084 + CSW01_19235 0.77 +0.5 977,086 - CSW01_19235 0.77 +0.9 977,451 - -0.2 977,453 + -2.4 977,464 - +0.8 977,502 + +0.3 977,569 + -0.0 977,594 - -0.3 977,599 - -2.9 977,765 + CSW01_19240 0.37 +1.8 977,829 - CSW01_19240 0.62 -1.2 977,856 - CSW01_19240 0.73 +0.5 977,955 - -3.4 978,050 - +1.5 978,180 - -1.9 978,180 - -0.6 978,259 + +0.8 978,259 + -1.6 978,259 + +0.7 978,267 - +0.5 978,267 - +0.6 978,267 - -2.7 978,267 - +1.2 978,288 + +1.3 978,379 + -1.7 978,379 + +1.0 978,563 - CSW01_19245 0.11 -2.3 978,571 - CSW01_19245 0.12 -0.3 978,645 - CSW01_19245 0.16 +1.5 978,685 - CSW01_19245 0.19 +1.1 978,685 - CSW01_19245 0.19 +0.3 978,708 - CSW01_19245 0.20 +0.5 978,708 - CSW01_19245 0.20 +0.0 978,834 + CSW01_19245 0.28 -1.5 978,915 + CSW01_19245 0.33 +1.3
Or see this region's nucleotide sequence