Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19105

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19100 and CSW01_19105 are separated by 149 nucleotidesCSW01_19105 and CSW01_19110 are separated by 71 nucleotidesCSW01_19110 and CSW01_19115 are separated by 200 nucleotides CSW01_19100: CSW01_19100 - alkene reductase, at 950,650 to 951,693 _19100 CSW01_19105: CSW01_19105 - TetR/AcrR family transcriptional regulator, at 951,843 to 952,418 _19105 CSW01_19110: CSW01_19110 - LysE family translocator, at 952,490 to 953,119 _19110 CSW01_19115: CSW01_19115 - AraC family transcriptional regulator, at 953,320 to 954,153 _19115 Position (kb) 951 952 953Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 951.021 kb on + strand, within CSW01_19100at 951.242 kb on + strand, within CSW01_19100at 951.274 kb on - strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.281 kb on - strand, within CSW01_19100at 951.310 kb on + strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.327 kb on - strand, within CSW01_19100at 951.351 kb on - strand, within CSW01_19100at 951.387 kb on + strand, within CSW01_19100at 951.438 kb on + strand, within CSW01_19100at 951.472 kb on - strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.482 kb on - strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.501 kb on - strand, within CSW01_19100at 951.510 kb on + strand, within CSW01_19100at 951.610 kb on - strandat 951.610 kb on - strandat 951.613 kb on + strandat 951.691 kb on + strandat 951.909 kb on + strand, within CSW01_19105at 951.952 kb on + strand, within CSW01_19105at 952.086 kb on + strand, within CSW01_19105at 952.087 kb on + strand, within CSW01_19105at 952.092 kb on + strand, within CSW01_19105at 952.095 kb on - strand, within CSW01_19105at 952.105 kb on - strand, within CSW01_19105at 952.253 kb on + strand, within CSW01_19105at 952.295 kb on - strand, within CSW01_19105at 952.365 kb on + strandat 952.365 kb on + strandat 952.582 kb on + strand, within CSW01_19110at 952.604 kb on + strand, within CSW01_19110at 952.613 kb on - strand, within CSW01_19110at 952.645 kb on - strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.659 kb on - strand, within CSW01_19110at 952.661 kb on - strand, within CSW01_19110at 952.708 kb on - strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.818 kb on - strand, within CSW01_19110at 952.831 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.955 kb on + strand, within CSW01_19110at 952.990 kb on - strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.245 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.395 kb on - strandat 953.395 kb on - strandat 953.397 kb on + strandat 953.409 kb on + strand, within CSW01_19115

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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951,021 + CSW01_19100 0.36 -2.8
951,242 + CSW01_19100 0.57 -0.6
951,274 - CSW01_19100 0.60 -2.3
951,278 + CSW01_19100 0.60 -2.9
951,278 + CSW01_19100 0.60 +0.1
951,281 - CSW01_19100 0.60 -0.8
951,310 + CSW01_19100 0.63 +0.5
951,318 - CSW01_19100 0.64 -1.2
951,318 - CSW01_19100 0.64 +1.5
951,327 - CSW01_19100 0.65 +0.8
951,351 - CSW01_19100 0.67 +1.5
951,387 + CSW01_19100 0.71 -1.5
951,438 + CSW01_19100 0.75 -0.5
951,472 - CSW01_19100 0.79 +0.3
951,474 + CSW01_19100 0.79 -2.5
951,474 + CSW01_19100 0.79 -2.5
951,482 - CSW01_19100 0.80 +0.6
951,493 + CSW01_19100 0.81 +0.8
951,493 + CSW01_19100 0.81 -1.6
951,501 - CSW01_19100 0.82 -0.0
951,510 + CSW01_19100 0.82 +0.7
951,610 - +0.6
951,610 - +0.2
951,613 + +0.2
951,691 + -1.2
951,909 + CSW01_19105 0.11 +0.8
951,952 + CSW01_19105 0.19 +1.0
952,086 + CSW01_19105 0.42 -1.5
952,087 + CSW01_19105 0.42 +0.5
952,092 + CSW01_19105 0.43 +0.4
952,095 - CSW01_19105 0.44 +0.2
952,105 - CSW01_19105 0.45 -0.3
952,253 + CSW01_19105 0.71 +0.8
952,295 - CSW01_19105 0.78 -1.2
952,365 + -0.4
952,365 + -1.2
952,582 + CSW01_19110 0.15 +1.8
952,604 + CSW01_19110 0.18 -0.1
952,613 - CSW01_19110 0.20 -0.0
952,645 - CSW01_19110 0.25 -3.2
952,653 + CSW01_19110 0.26 -1.7
952,653 + CSW01_19110 0.26 -0.2
952,659 - CSW01_19110 0.27 -1.9
952,661 - CSW01_19110 0.27 -4.3
952,708 - CSW01_19110 0.35 +1.3
952,810 + CSW01_19110 0.51 +2.0
952,810 + CSW01_19110 0.51 +0.5
952,810 + CSW01_19110 0.51 -3.6
952,810 + CSW01_19110 0.51 +0.7
952,818 - CSW01_19110 0.52 -1.8
952,831 - CSW01_19110 0.54 -0.2
952,868 - CSW01_19110 0.60 +0.4
952,868 - CSW01_19110 0.60 +0.3
952,870 + CSW01_19110 0.60 -0.1
952,870 + CSW01_19110 0.60 -1.4
952,870 + CSW01_19110 0.60 +0.1
952,878 - CSW01_19110 0.62 -1.8
952,878 - CSW01_19110 0.62 -1.4
952,955 + CSW01_19110 0.74 +0.0
952,990 - CSW01_19110 0.79 +0.7
953,048 + CSW01_19110 0.89 +0.6
953,048 + CSW01_19110 0.89 -0.3
953,245 + -0.4
953,387 + -1.0
953,387 + +1.1
953,387 + +0.2
953,387 + -0.4
953,395 - -1.2
953,395 - +0.8
953,397 + +0.9
953,409 + CSW01_19115 0.11 -2.4

Or see this region's nucleotide sequence