Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19065

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19060 and CSW01_19065 are separated by 78 nucleotidesCSW01_19065 and CSW01_19070 are separated by 91 nucleotides CSW01_19060: CSW01_19060 - MATE family efflux transporter, at 940,780 to 942,114 _19060 CSW01_19065: CSW01_19065 - ATP-dependent helicase, at 942,193 to 943,479 _19065 CSW01_19070: CSW01_19070 - LysR family transcriptional regulator, at 943,571 to 944,497 _19070 Position (kb) 942 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 941.213 kb on - strand, within CSW01_19060at 941.226 kb on + strand, within CSW01_19060at 941.250 kb on + strand, within CSW01_19060at 941.289 kb on - strand, within CSW01_19060at 941.397 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.416 kb on - strand, within CSW01_19060at 941.448 kb on + strand, within CSW01_19060at 941.456 kb on - strand, within CSW01_19060at 941.465 kb on + strand, within CSW01_19060at 941.465 kb on + strand, within CSW01_19060at 941.473 kb on - strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.518 kb on + strand, within CSW01_19060at 941.631 kb on + strand, within CSW01_19060at 941.652 kb on + strand, within CSW01_19060at 941.660 kb on - strand, within CSW01_19060at 941.662 kb on + strand, within CSW01_19060at 941.791 kb on - strand, within CSW01_19060at 941.905 kb on + strand, within CSW01_19060at 941.921 kb on - strand, within CSW01_19060at 941.923 kb on + strand, within CSW01_19060at 942.040 kb on - strandat 942.047 kb on + strandat 942.052 kb on + strandat 942.092 kb on - strandat 942.114 kb on + strandat 942.122 kb on - strandat 942.217 kb on - strandat 942.278 kb on - strandat 942.290 kb on + strandat 942.348 kb on + strand, within CSW01_19065at 942.348 kb on + strand, within CSW01_19065at 942.348 kb on + strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.368 kb on - strand, within CSW01_19065at 942.405 kb on + strand, within CSW01_19065at 942.428 kb on - strand, within CSW01_19065at 942.438 kb on + strand, within CSW01_19065at 942.507 kb on - strand, within CSW01_19065at 942.547 kb on + strand, within CSW01_19065at 942.555 kb on - strand, within CSW01_19065at 942.613 kb on + strand, within CSW01_19065at 942.621 kb on - strand, within CSW01_19065at 942.841 kb on - strand, within CSW01_19065at 942.886 kb on + strand, within CSW01_19065at 942.992 kb on - strand, within CSW01_19065at 942.997 kb on + strand, within CSW01_19065at 943.005 kb on - strand, within CSW01_19065at 943.091 kb on + strand, within CSW01_19065at 943.099 kb on - strand, within CSW01_19065at 943.121 kb on - strand, within CSW01_19065at 943.121 kb on - strand, within CSW01_19065at 943.128 kb on + strand, within CSW01_19065at 943.139 kb on + strand, within CSW01_19065at 943.160 kb on + strand, within CSW01_19065at 943.197 kb on + strand, within CSW01_19065at 943.198 kb on + strand, within CSW01_19065at 943.206 kb on - strand, within CSW01_19065at 943.206 kb on - strand, within CSW01_19065at 943.212 kb on + strand, within CSW01_19065at 943.238 kb on + strand, within CSW01_19065at 943.256 kb on - strand, within CSW01_19065at 943.258 kb on - strand, within CSW01_19065at 943.374 kb on + strandat 943.403 kb on + strandat 943.422 kb on - strandat 943.424 kb on + strandat 943.463 kb on + strandat 943.471 kb on + strandat 943.500 kb on + strandat 943.603 kb on - strandat 943.603 kb on - strandat 943.664 kb on - strand, within CSW01_19070at 943.757 kb on + strand, within CSW01_19070at 943.790 kb on + strand, within CSW01_19070at 943.807 kb on - strand, within CSW01_19070at 943.871 kb on - strand, within CSW01_19070at 943.873 kb on + strand, within CSW01_19070at 943.932 kb on + strand, within CSW01_19070at 943.934 kb on + strand, within CSW01_19070at 943.950 kb on - strand, within CSW01_19070at 943.950 kb on - strand, within CSW01_19070at 943.951 kb on + strand, within CSW01_19070at 943.991 kb on - strand, within CSW01_19070at 943.998 kb on + strand, within CSW01_19070at 944.028 kb on - strand, within CSW01_19070at 944.119 kb on + strand, within CSW01_19070at 944.129 kb on + strand, within CSW01_19070at 944.137 kb on + strand, within CSW01_19070at 944.145 kb on - strand, within CSW01_19070at 944.230 kb on + strand, within CSW01_19070at 944.319 kb on - strand, within CSW01_19070at 944.397 kb on - strand, within CSW01_19070at 944.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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941,213 - CSW01_19060 0.32 +0.2
941,226 + CSW01_19060 0.33 -0.2
941,250 + CSW01_19060 0.35 -0.5
941,289 - CSW01_19060 0.38 +0.3
941,397 + CSW01_19060 0.46 +0.0
941,402 + CSW01_19060 0.47 -0.9
941,402 + CSW01_19060 0.47 -0.1
941,416 - CSW01_19060 0.48 +1.5
941,448 + CSW01_19060 0.50 -0.8
941,456 - CSW01_19060 0.51 +0.7
941,465 + CSW01_19060 0.51 +2.9
941,465 + CSW01_19060 0.51 -3.4
941,473 - CSW01_19060 0.52 -0.2
941,500 + CSW01_19060 0.54 +1.2
941,500 + CSW01_19060 0.54 -0.1
941,500 + CSW01_19060 0.54 +1.2
941,518 + CSW01_19060 0.55 -3.8
941,631 + CSW01_19060 0.64 +0.9
941,652 + CSW01_19060 0.65 -0.1
941,660 - CSW01_19060 0.66 +0.8
941,662 + CSW01_19060 0.66 -1.9
941,791 - CSW01_19060 0.76 -2.5
941,905 + CSW01_19060 0.84 +1.2
941,921 - CSW01_19060 0.85 -0.3
941,923 + CSW01_19060 0.86 +0.1
942,040 - +2.3
942,047 + -1.0
942,052 + -0.8
942,092 - -1.5
942,114 + -0.8
942,122 - +0.9
942,217 - -1.5
942,278 - -1.0
942,290 + -3.3
942,348 + CSW01_19065 0.12 -1.7
942,348 + CSW01_19065 0.12 +0.3
942,348 + CSW01_19065 0.12 +1.4
942,356 - CSW01_19065 0.13 -0.8
942,356 - CSW01_19065 0.13 +0.6
942,356 - CSW01_19065 0.13 +2.5
942,356 - CSW01_19065 0.13 -0.4
942,356 - CSW01_19065 0.13 +2.2
942,368 - CSW01_19065 0.14 -0.1
942,405 + CSW01_19065 0.16 -0.2
942,428 - CSW01_19065 0.18 -2.1
942,438 + CSW01_19065 0.19 -1.2
942,507 - CSW01_19065 0.24 +1.2
942,547 + CSW01_19065 0.28 +0.3
942,555 - CSW01_19065 0.28 +0.9
942,613 + CSW01_19065 0.33 +0.2
942,621 - CSW01_19065 0.33 -0.4
942,841 - CSW01_19065 0.50 +1.0
942,886 + CSW01_19065 0.54 -0.2
942,992 - CSW01_19065 0.62 +0.2
942,997 + CSW01_19065 0.62 -0.5
943,005 - CSW01_19065 0.63 -3.5
943,091 + CSW01_19065 0.70 +0.3
943,099 - CSW01_19065 0.70 -0.6
943,121 - CSW01_19065 0.72 -1.2
943,121 - CSW01_19065 0.72 -0.8
943,128 + CSW01_19065 0.73 +1.3
943,139 + CSW01_19065 0.74 +0.2
943,160 + CSW01_19065 0.75 -1.7
943,197 + CSW01_19065 0.78 -0.5
943,198 + CSW01_19065 0.78 +0.8
943,206 - CSW01_19065 0.79 +0.1
943,206 - CSW01_19065 0.79 +0.9
943,212 + CSW01_19065 0.79 -3.5
943,238 + CSW01_19065 0.81 -0.4
943,256 - CSW01_19065 0.83 -1.0
943,258 - CSW01_19065 0.83 -0.1
943,374 + +1.4
943,403 + -2.5
943,422 - -3.8
943,424 + +1.7
943,463 + +1.0
943,471 + -0.5
943,500 + +0.6
943,603 - -3.3
943,603 - -2.8
943,664 - CSW01_19070 0.10 +1.3
943,757 + CSW01_19070 0.20 -0.7
943,790 + CSW01_19070 0.24 +0.4
943,807 - CSW01_19070 0.25 +0.6
943,871 - CSW01_19070 0.32 -0.4
943,873 + CSW01_19070 0.33 -0.4
943,932 + CSW01_19070 0.39 -1.6
943,934 + CSW01_19070 0.39 +0.2
943,950 - CSW01_19070 0.41 -2.4
943,950 - CSW01_19070 0.41 -2.7
943,951 + CSW01_19070 0.41 -1.0
943,991 - CSW01_19070 0.45 -0.2
943,998 + CSW01_19070 0.46 -2.2
944,028 - CSW01_19070 0.49 +0.1
944,119 + CSW01_19070 0.59 +1.1
944,129 + CSW01_19070 0.60 -1.4
944,137 + CSW01_19070 0.61 -1.7
944,145 - CSW01_19070 0.62 +0.1
944,230 + CSW01_19070 0.71 -1.8
944,319 - CSW01_19070 0.81 -0.6
944,397 - CSW01_19070 0.89 -0.5
944,446 - +0.7

Or see this region's nucleotide sequence