Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18825 and CSW01_18830 are separated by 151 nucleotides CSW01_18830 and CSW01_18835 are separated by 151 nucleotides CSW01_18835 and CSW01_18840 are separated by 83 nucleotides
CSW01_18825: CSW01_18825 - GGDEF domain-containing protein, at 888,441 to 889,406
_18825
CSW01_18830: CSW01_18830 - DeoR/GlpR family transcriptional regulator, at 889,558 to 890,319
_18830
CSW01_18835: CSW01_18835 - acyl-CoA thioesterase, at 890,471 to 890,959
_18835
CSW01_18840: CSW01_18840 - hypothetical protein, at 891,043 to 891,321
_18840
Position (kb) 889
890
891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 888.604 kb on - strand, within CSW01_18825 at 888.624 kb on - strand, within CSW01_18825 at 888.808 kb on + strand, within CSW01_18825 at 888.809 kb on - strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.813 kb on + strand, within CSW01_18825 at 888.821 kb on - strand, within CSW01_18825 at 888.821 kb on - strand, within CSW01_18825 at 888.877 kb on + strand, within CSW01_18825 at 888.980 kb on - strand, within CSW01_18825 at 888.999 kb on - strand, within CSW01_18825 at 889.064 kb on + strand, within CSW01_18825 at 889.233 kb on - strand, within CSW01_18825 at 889.254 kb on + strand, within CSW01_18825 at 889.273 kb on + strand, within CSW01_18825 at 889.273 kb on + strand, within CSW01_18825 at 889.281 kb on - strand, within CSW01_18825 at 889.346 kb on + strand at 889.346 kb on + strand at 889.346 kb on + strand at 889.346 kb on + strand at 889.346 kb on + strand at 889.354 kb on - strand at 889.354 kb on - strand at 889.354 kb on - strand at 889.354 kb on - strand at 889.354 kb on - strand at 889.401 kb on + strand at 889.401 kb on + strand at 889.409 kb on - strand at 889.532 kb on - strand at 889.602 kb on + strand at 889.694 kb on - strand, within CSW01_18830 at 889.747 kb on - strand, within CSW01_18830 at 889.813 kb on + strand, within CSW01_18830 at 889.990 kb on - strand, within CSW01_18830 at 890.025 kb on - strand, within CSW01_18830 at 890.125 kb on - strand, within CSW01_18830 at 890.125 kb on - strand, within CSW01_18830 at 890.127 kb on - strand, within CSW01_18830 at 890.208 kb on + strand, within CSW01_18830 at 890.216 kb on - strand, within CSW01_18830 at 890.246 kb on + strand at 890.249 kb on - strand at 890.496 kb on - strand at 890.543 kb on + strand, within CSW01_18835 at 890.576 kb on - strand, within CSW01_18835 at 890.636 kb on + strand, within CSW01_18835 at 890.750 kb on + strand, within CSW01_18835 at 890.780 kb on + strand, within CSW01_18835 at 890.961 kb on + strand at 890.981 kb on - strand at 891.053 kb on + strand at 891.109 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.128 kb on - strand, within CSW01_18840 at 891.144 kb on + strand, within CSW01_18840 at 891.301 kb on + strand at 891.301 kb on + strand at 891.309 kb on - strand at 891.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 888,604 - CSW01_18825 0.17 -0.3 888,624 - CSW01_18825 0.19 -1.2 888,808 + CSW01_18825 0.38 -0.8 888,809 - CSW01_18825 0.38 +1.1 888,813 + CSW01_18825 0.39 -1.2 888,813 + CSW01_18825 0.39 -0.5 888,813 + CSW01_18825 0.39 -4.2 888,813 + CSW01_18825 0.39 +1.1 888,813 + CSW01_18825 0.39 -1.4 888,813 + CSW01_18825 0.39 -0.2 888,821 - CSW01_18825 0.39 -1.8 888,821 - CSW01_18825 0.39 +0.3 888,877 + CSW01_18825 0.45 +1.3 888,980 - CSW01_18825 0.56 +0.7 888,999 - CSW01_18825 0.58 +0.4 889,064 + CSW01_18825 0.64 -0.4 889,233 - CSW01_18825 0.82 +0.1 889,254 + CSW01_18825 0.84 -0.4 889,273 + CSW01_18825 0.86 -0.0 889,273 + CSW01_18825 0.86 +0.6 889,281 - CSW01_18825 0.87 -0.4 889,346 + -0.6 889,346 + -0.2 889,346 + +0.0 889,346 + -2.6 889,346 + +2.4 889,354 - -1.0 889,354 - -0.6 889,354 - -2.1 889,354 - -0.5 889,354 - +0.4 889,401 + -0.6 889,401 + -0.7 889,409 - -0.1 889,532 - -0.1 889,602 + -1.0 889,694 - CSW01_18830 0.18 -0.8 889,747 - CSW01_18830 0.25 -0.5 889,813 + CSW01_18830 0.33 +0.1 889,990 - CSW01_18830 0.57 -1.7 890,025 - CSW01_18830 0.61 -2.0 890,125 - CSW01_18830 0.74 +0.8 890,125 - CSW01_18830 0.74 -1.0 890,127 - CSW01_18830 0.75 -1.5 890,208 + CSW01_18830 0.85 +0.3 890,216 - CSW01_18830 0.86 -1.1 890,246 + -0.1 890,249 - +0.8 890,496 - +0.3 890,543 + CSW01_18835 0.15 -0.2 890,576 - CSW01_18835 0.21 +0.1 890,636 + CSW01_18835 0.34 -2.0 890,750 + CSW01_18835 0.57 -0.9 890,780 + CSW01_18835 0.63 -2.8 890,961 + -0.4 890,981 - -2.1 891,053 + +2.0 891,109 + CSW01_18840 0.24 -1.3 891,120 + CSW01_18840 0.28 -0.3 891,120 + CSW01_18840 0.28 +0.4 891,120 + CSW01_18840 0.28 -1.5 891,128 - CSW01_18840 0.30 +0.3 891,144 + CSW01_18840 0.36 -1.9 891,301 + -1.1 891,301 + +0.5 891,309 - -2.8 891,309 - -0.6
Or see this region's nucleotide sequence