Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18790 and CSW01_18795 are separated by 348 nucleotides CSW01_18795 and CSW01_18800 are separated by 177 nucleotides CSW01_18800 and CSW01_18805 are separated by 182 nucleotides
CSW01_18790: CSW01_18790 - metal-dependent phosphohydrolase, at 882,524 to 883,906
_18790
CSW01_18795: CSW01_18795 - cold-shock protein CspV, at 884,255 to 884,467
_18795
CSW01_18800: CSW01_18800 - hypothetical protein, at 884,645 to 884,854
_18800
CSW01_18805: CSW01_18805 - hypothetical protein, at 885,037 to 885,393
_18805
Position (kb) 884
885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 883.291 kb on - strand, within CSW01_18790 at 883.304 kb on + strand, within CSW01_18790 at 883.305 kb on - strand, within CSW01_18790 at 883.377 kb on + strand, within CSW01_18790 at 883.378 kb on - strand, within CSW01_18790 at 883.397 kb on + strand, within CSW01_18790 at 883.397 kb on + strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.482 kb on - strand, within CSW01_18790 at 883.487 kb on + strand, within CSW01_18790 at 883.507 kb on + strand, within CSW01_18790 at 883.510 kb on - strand, within CSW01_18790 at 883.566 kb on + strand, within CSW01_18790 at 883.571 kb on + strand, within CSW01_18790 at 883.571 kb on + strand, within CSW01_18790 at 883.572 kb on - strand, within CSW01_18790 at 883.629 kb on - strand, within CSW01_18790 at 883.663 kb on - strand, within CSW01_18790 at 883.698 kb on - strand, within CSW01_18790 at 883.716 kb on + strand, within CSW01_18790 at 883.716 kb on + strand, within CSW01_18790 at 883.749 kb on + strand, within CSW01_18790 at 883.758 kb on - strand, within CSW01_18790 at 883.758 kb on - strand, within CSW01_18790 at 883.763 kb on - strand, within CSW01_18790 at 883.765 kb on + strand, within CSW01_18790 at 883.765 kb on + strand, within CSW01_18790 at 883.772 kb on - strand at 883.773 kb on - strand at 883.773 kb on - strand at 883.784 kb on + strand at 883.816 kb on + strand at 883.836 kb on + strand at 883.844 kb on - strand at 883.889 kb on + strand at 883.902 kb on - strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.941 kb on + strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.950 kb on + strand at 883.950 kb on + strand at 883.955 kb on + strand at 883.955 kb on + strand at 883.955 kb on + strand at 883.958 kb on - strand at 883.958 kb on - strand at 883.960 kb on + strand at 883.963 kb on - strand at 883.963 kb on - strand at 883.968 kb on - strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.973 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.070 kb on - strand at 884.304 kb on - strand, within CSW01_18795 at 884.321 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.331 kb on - strand, within CSW01_18795 at 884.331 kb on - strand, within CSW01_18795 at 884.342 kb on - strand, within CSW01_18795 at 884.353 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.402 kb on + strand, within CSW01_18795 at 884.404 kb on - strand, within CSW01_18795 at 884.411 kb on - strand, within CSW01_18795 at 884.425 kb on + strand, within CSW01_18795 at 884.436 kb on + strand, within CSW01_18795 at 884.444 kb on - strand, within CSW01_18795 at 884.444 kb on - strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.446 kb on + strand at 884.462 kb on + strand at 884.478 kb on + strand at 884.485 kb on + strand at 884.492 kb on + strand at 884.500 kb on - strand at 884.547 kb on + strand at 884.547 kb on + strand at 884.555 kb on - strand at 884.579 kb on + strand at 884.584 kb on - strand at 884.587 kb on - strand at 884.595 kb on - strand at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.735 kb on + strand, within CSW01_18800 at 884.735 kb on + strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.743 kb on - strand, within CSW01_18800 at 884.751 kb on + strand, within CSW01_18800 at 884.836 kb on - strand at 884.980 kb on - strand at 884.991 kb on + strand at 884.999 kb on - strand at 884.999 kb on - strand at 884.999 kb on - strand at 884.999 kb on - strand at 884.999 kb on - strand at 884.999 kb on - strand at 884.999 kb on - strand at 885.001 kb on + strand at 885.001 kb on - strand at 885.007 kb on + strand at 885.007 kb on + strand at 885.007 kb on + strand at 885.008 kb on - strand at 885.020 kb on - strand at 885.024 kb on + strand at 885.039 kb on - strand at 885.136 kb on - strand, within CSW01_18805 at 885.151 kb on - strand, within CSW01_18805 at 885.167 kb on + strand, within CSW01_18805 at 885.214 kb on + strand, within CSW01_18805 at 885.221 kb on + strand, within CSW01_18805 at 885.221 kb on + strand, within CSW01_18805 at 885.230 kb on - strand, within CSW01_18805 at 885.302 kb on - strand, within CSW01_18805 at 885.302 kb on - strand, within CSW01_18805 at 885.305 kb on + strand, within CSW01_18805 at 885.308 kb on - strand, within CSW01_18805 at 885.312 kb on + strand, within CSW01_18805 at 885.328 kb on + strand, within CSW01_18805 at 885.404 kb on + strand at 885.404 kb on + strand at 885.409 kb on + strand at 885.409 kb on + strand at 885.412 kb on - strand at 885.412 kb on - strand at 885.414 kb on + strand at 885.422 kb on - strand at 885.427 kb on - strand at 885.454 kb on + strand at 885.454 kb on + strand at 885.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 883,291 - CSW01_18790 0.55 +1.1 883,304 + CSW01_18790 0.56 -0.7 883,305 - CSW01_18790 0.56 +1.6 883,377 + CSW01_18790 0.62 +0.2 883,378 - CSW01_18790 0.62 +0.8 883,397 + CSW01_18790 0.63 -1.4 883,397 + CSW01_18790 0.63 -1.5 883,405 - CSW01_18790 0.64 -1.7 883,405 - CSW01_18790 0.64 +0.5 883,405 - CSW01_18790 0.64 -3.5 883,482 - CSW01_18790 0.69 -0.3 883,487 + CSW01_18790 0.70 -1.5 883,507 + CSW01_18790 0.71 -0.4 883,510 - CSW01_18790 0.71 +0.3 883,566 + CSW01_18790 0.75 -2.8 883,571 + CSW01_18790 0.76 -2.7 883,571 + CSW01_18790 0.76 +1.3 883,572 - CSW01_18790 0.76 +1.3 883,629 - CSW01_18790 0.80 -3.8 883,663 - CSW01_18790 0.82 +0.3 883,698 - CSW01_18790 0.85 -0.4 883,716 + CSW01_18790 0.86 +1.1 883,716 + CSW01_18790 0.86 -2.1 883,749 + CSW01_18790 0.89 -0.9 883,758 - CSW01_18790 0.89 +0.5 883,758 - CSW01_18790 0.89 +0.4 883,763 - CSW01_18790 0.90 -0.5 883,765 + CSW01_18790 0.90 -1.4 883,765 + CSW01_18790 0.90 -0.3 883,772 - -3.2 883,773 - +0.7 883,773 - -0.7 883,784 + +0.6 883,816 + +0.4 883,836 + -0.6 883,844 - -0.8 883,889 + +0.6 883,902 - -0.6 883,940 + +0.0 883,940 + -0.5 883,940 + +1.6 883,940 + +1.5 883,940 + +1.4 883,940 + -0.2 883,941 + -0.2 883,948 - +0.7 883,948 - +0.7 883,948 - -1.3 883,948 - -0.8 883,948 - +0.0 883,950 + +0.9 883,950 + +0.3 883,955 + -1.1 883,955 + -0.2 883,955 + -0.4 883,958 - -2.9 883,958 - +0.6 883,960 + +1.0 883,963 - +0.3 883,963 - -1.5 883,968 - +0.0 883,972 + +1.3 883,972 + -2.7 883,972 + -0.4 883,972 + +1.3 883,972 + -1.8 883,972 + -0.3 883,972 + +0.1 883,973 - +1.2 883,980 - -0.8 883,980 - -0.2 883,980 - +0.5 883,980 - -2.6 883,980 - -0.6 884,002 + +0.2 884,002 + -0.7 884,002 + +0.9 884,002 + -2.1 884,010 - +0.5 884,010 - -1.9 884,010 - -0.2 884,010 - -3.7 884,010 - +1.2 884,010 - -2.4 884,010 - -1.2 884,010 - +0.8 884,010 - -2.1 884,010 - -2.6 884,010 - +0.7 884,010 - +0.1 884,010 - -1.8 884,010 - -1.9 884,010 - -2.6 884,010 - +0.7 884,010 - +0.0 884,070 - -1.1 884,304 - CSW01_18795 0.23 -4.3 884,321 + CSW01_18795 0.31 -1.7 884,323 + CSW01_18795 0.32 -2.1 884,323 + CSW01_18795 0.32 -2.6 884,323 + CSW01_18795 0.32 -1.4 884,331 - CSW01_18795 0.36 -2.7 884,331 - CSW01_18795 0.36 -2.4 884,342 - CSW01_18795 0.41 +1.3 884,353 + CSW01_18795 0.46 +0.2 884,368 + CSW01_18795 0.53 -0.4 884,368 + CSW01_18795 0.53 +0.2 884,368 + CSW01_18795 0.53 -1.2 884,368 + CSW01_18795 0.53 -0.4 884,402 + CSW01_18795 0.69 +1.8 884,404 - CSW01_18795 0.70 -3.9 884,411 - CSW01_18795 0.73 -3.4 884,425 + CSW01_18795 0.80 -2.9 884,436 + CSW01_18795 0.85 -2.1 884,444 - CSW01_18795 0.89 -2.8 884,444 - CSW01_18795 0.89 +0.8 884,445 + CSW01_18795 0.89 -2.0 884,445 + CSW01_18795 0.89 +1.2 884,445 + CSW01_18795 0.89 -1.7 884,446 + -1.3 884,462 + -3.9 884,478 + -0.8 884,485 + +1.0 884,492 + -1.1 884,500 - +0.5 884,547 + +0.9 884,547 + -0.8 884,555 - -1.4 884,579 + -0.8 884,584 - -1.2 884,587 - -2.0 884,595 - -2.0 884,730 + CSW01_18800 0.40 -1.7 884,730 + CSW01_18800 0.40 -3.0 884,730 + CSW01_18800 0.40 -2.4 884,730 + CSW01_18800 0.40 -3.7 884,730 + CSW01_18800 0.40 -0.5 884,730 + CSW01_18800 0.40 +0.8 884,730 + CSW01_18800 0.40 -1.4 884,735 + CSW01_18800 0.43 +0.6 884,735 + CSW01_18800 0.43 +0.6 884,738 - CSW01_18800 0.44 +0.5 884,738 - CSW01_18800 0.44 +0.8 884,738 - CSW01_18800 0.44 +0.4 884,738 - CSW01_18800 0.44 -0.7 884,738 - CSW01_18800 0.44 -2.4 884,738 - CSW01_18800 0.44 +0.3 884,738 - CSW01_18800 0.44 -2.5 884,738 - CSW01_18800 0.44 -2.1 884,738 - CSW01_18800 0.44 +0.6 884,738 - CSW01_18800 0.44 -0.0 884,738 - CSW01_18800 0.44 -0.5 884,738 - CSW01_18800 0.44 +1.4 884,738 - CSW01_18800 0.44 -1.4 884,738 - CSW01_18800 0.44 -1.1 884,743 - CSW01_18800 0.47 +0.9 884,751 + CSW01_18800 0.50 -0.1 884,836 - -0.7 884,980 - +1.2 884,991 + -1.0 884,999 - -1.1 884,999 - -0.2 884,999 - +0.9 884,999 - +0.1 884,999 - +1.8 884,999 - -2.6 884,999 - -0.3 885,001 + +0.0 885,001 - +1.5 885,007 + +0.7 885,007 + +0.2 885,007 + -1.6 885,008 - -0.7 885,020 - -2.0 885,024 + +0.9 885,039 - -1.8 885,136 - CSW01_18805 0.28 +0.4 885,151 - CSW01_18805 0.32 -0.3 885,167 + CSW01_18805 0.36 +0.4 885,214 + CSW01_18805 0.50 -2.4 885,221 + CSW01_18805 0.52 -2.0 885,221 + CSW01_18805 0.52 +0.3 885,230 - CSW01_18805 0.54 +0.4 885,302 - CSW01_18805 0.74 +0.1 885,302 - CSW01_18805 0.74 -0.5 885,305 + CSW01_18805 0.75 -0.2 885,308 - CSW01_18805 0.76 -0.1 885,312 + CSW01_18805 0.77 -3.1 885,328 + CSW01_18805 0.82 +0.3 885,404 + -0.0 885,404 + -3.3 885,409 + +0.3 885,409 + +1.4 885,412 - +1.4 885,412 - -2.3 885,414 + -0.9 885,422 - -1.4 885,427 - -0.1 885,454 + -0.1 885,454 + +1.0 885,459 + -0.3
Or see this region's nucleotide sequence