Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18725 and CSW01_18730 are separated by 498 nucleotides CSW01_18730 and CSW01_18735 are separated by 202 nucleotides CSW01_18735 and CSW01_18740 are separated by 60 nucleotides
CSW01_18725: CSW01_18725 - TetR/AcrR family transcriptional regulator, at 868,525 to 869,010
_18725
CSW01_18730: CSW01_18730 - DUF406 domain-containing protein, at 869,509 to 869,811
_18730
CSW01_18735: CSW01_18735 - hypothetical protein, at 870,014 to 870,613
_18735
CSW01_18740: CSW01_18740 - acyltransferase, at 870,674 to 871,792
_18740
Position (kb) 869
870 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 868.906 kb on - strand, within CSW01_18725 at 868.942 kb on + strand, within CSW01_18725 at 868.950 kb on - strand, within CSW01_18725 at 869.072 kb on + strand at 869.088 kb on + strand at 869.119 kb on + strand at 869.119 kb on + strand at 869.127 kb on - strand at 869.161 kb on - strand at 869.190 kb on + strand at 869.598 kb on - strand, within CSW01_18730 at 869.697 kb on + strand, within CSW01_18730 at 869.697 kb on - strand, within CSW01_18730 at 869.952 kb on + strand at 869.963 kb on + strand at 869.970 kb on + strand at 870.006 kb on - strand at 870.007 kb on - strand at 870.087 kb on + strand, within CSW01_18735 at 870.092 kb on + strand, within CSW01_18735 at 870.092 kb on + strand, within CSW01_18735 at 870.100 kb on - strand, within CSW01_18735 at 870.120 kb on + strand, within CSW01_18735 at 870.120 kb on + strand, within CSW01_18735 at 870.128 kb on - strand, within CSW01_18735 at 870.128 kb on - strand, within CSW01_18735 at 870.139 kb on + strand, within CSW01_18735 at 870.139 kb on + strand, within CSW01_18735 at 870.147 kb on - strand, within CSW01_18735 at 870.225 kb on + strand, within CSW01_18735 at 870.225 kb on + strand, within CSW01_18735 at 870.258 kb on - strand, within CSW01_18735 at 870.342 kb on + strand, within CSW01_18735 at 870.342 kb on + strand, within CSW01_18735 at 870.350 kb on - strand, within CSW01_18735 at 870.406 kb on - strand, within CSW01_18735 at 870.430 kb on + strand, within CSW01_18735 at 870.435 kb on + strand, within CSW01_18735 at 870.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 868,906 - CSW01_18725 0.78 -1.7 868,942 + CSW01_18725 0.86 -0.8 868,950 - CSW01_18725 0.87 -0.4 869,072 + +0.4 869,088 + -0.6 869,119 + -1.2 869,119 + -0.3 869,127 - +0.2 869,161 - +2.0 869,190 + -0.4 869,598 - CSW01_18730 0.29 +0.1 869,697 + CSW01_18730 0.62 -1.8 869,697 - CSW01_18730 0.62 -2.2 869,952 + -0.5 869,963 + -0.5 869,970 + -2.5 870,006 - -3.4 870,007 - -0.9 870,087 + CSW01_18735 0.12 -1.8 870,092 + CSW01_18735 0.13 +0.2 870,092 + CSW01_18735 0.13 +1.9 870,100 - CSW01_18735 0.14 -0.1 870,120 + CSW01_18735 0.18 -1.8 870,120 + CSW01_18735 0.18 -3.5 870,128 - CSW01_18735 0.19 +1.0 870,128 - CSW01_18735 0.19 -0.0 870,139 + CSW01_18735 0.21 +1.5 870,139 + CSW01_18735 0.21 +1.8 870,147 - CSW01_18735 0.22 -2.0 870,225 + CSW01_18735 0.35 +1.7 870,225 + CSW01_18735 0.35 +0.0 870,258 - CSW01_18735 0.41 -0.1 870,342 + CSW01_18735 0.55 +1.9 870,342 + CSW01_18735 0.55 -3.8 870,350 - CSW01_18735 0.56 -0.5 870,406 - CSW01_18735 0.65 -3.4 870,430 + CSW01_18735 0.69 +1.6 870,435 + CSW01_18735 0.70 -0.1 870,582 + +0.8
Or see this region's nucleotide sequence