Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18255 and CSW01_18260 are separated by 32 nucleotides CSW01_18260 and CSW01_18265 are separated by 80 nucleotides
CSW01_18255: CSW01_18255 - molecular chaperone GroEL, at 764,324 to 765,916
_18255
CSW01_18260: CSW01_18260 - hypothetical protein, at 765,949 to 766,155
_18260
CSW01_18265: CSW01_18265 - aspartate kinase, at 766,236 to 767,660
_18265
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.966 kb on - strand, within CSW01_18255 at 764.971 kb on - strand, within CSW01_18255 at 764.973 kb on - strand, within CSW01_18255 at 765.043 kb on + strand, within CSW01_18255 at 765.070 kb on - strand, within CSW01_18255 at 765.155 kb on + strand, within CSW01_18255 at 765.175 kb on + strand, within CSW01_18255 at 765.175 kb on + strand, within CSW01_18255 at 765.175 kb on + strand, within CSW01_18255 at 765.269 kb on + strand, within CSW01_18255 at 765.320 kb on + strand, within CSW01_18255 at 765.429 kb on + strand, within CSW01_18255 at 765.436 kb on + strand, within CSW01_18255 at 765.593 kb on + strand, within CSW01_18255 at 765.635 kb on - strand, within CSW01_18255 at 765.707 kb on + strand, within CSW01_18255 at 765.715 kb on - strand, within CSW01_18255 at 765.715 kb on - strand, within CSW01_18255 at 765.830 kb on + strand at 765.830 kb on + strand at 765.830 kb on + strand at 765.830 kb on + strand at 765.830 kb on + strand at 765.830 kb on + strand at 765.830 kb on + strand at 765.838 kb on - strand at 765.838 kb on - strand at 765.838 kb on - strand at 765.847 kb on + strand at 765.925 kb on + strand at 765.925 kb on + strand at 765.933 kb on - strand at 765.941 kb on - strand at 765.993 kb on + strand, within CSW01_18260 at 765.993 kb on + strand, within CSW01_18260 at 766.001 kb on - strand, within CSW01_18260 at 766.001 kb on - strand, within CSW01_18260 at 766.001 kb on - strand, within CSW01_18260 at 766.008 kb on + strand, within CSW01_18260 at 766.014 kb on + strand, within CSW01_18260 at 766.027 kb on + strand, within CSW01_18260 at 766.049 kb on + strand, within CSW01_18260 at 766.138 kb on + strand at 766.146 kb on - strand at 766.152 kb on - strand at 766.152 kb on - strand at 766.157 kb on - strand at 766.255 kb on + strand at 766.255 kb on + strand at 766.273 kb on - strand at 766.375 kb on + strand at 766.455 kb on + strand, within CSW01_18265 at 766.550 kb on + strand, within CSW01_18265 at 766.558 kb on - strand, within CSW01_18265 at 766.558 kb on - strand, within CSW01_18265 at 766.596 kb on + strand, within CSW01_18265 at 766.630 kb on + strand, within CSW01_18265 at 766.686 kb on + strand, within CSW01_18265 at 766.700 kb on + strand, within CSW01_18265 at 766.714 kb on + strand, within CSW01_18265 at 766.719 kb on + strand, within CSW01_18265 at 766.771 kb on - strand, within CSW01_18265 at 766.839 kb on - strand, within CSW01_18265 at 766.897 kb on - strand, within CSW01_18265 at 766.938 kb on + strand, within CSW01_18265 at 766.952 kb on - strand, within CSW01_18265 at 766.973 kb on + strand, within CSW01_18265 at 766.978 kb on + strand, within CSW01_18265 at 766.986 kb on - strand, within CSW01_18265 at 766.986 kb on - strand, within CSW01_18265 at 767.037 kb on + strand, within CSW01_18265 at 767.045 kb on - strand, within CSW01_18265
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 764,966 - CSW01_18255 0.40 -2.1 764,971 - CSW01_18255 0.41 +0.7 764,973 - CSW01_18255 0.41 +0.9 765,043 + CSW01_18255 0.45 -2.7 765,070 - CSW01_18255 0.47 +1.0 765,155 + CSW01_18255 0.52 +1.2 765,175 + CSW01_18255 0.53 +0.3 765,175 + CSW01_18255 0.53 -3.7 765,175 + CSW01_18255 0.53 +1.9 765,269 + CSW01_18255 0.59 +1.1 765,320 + CSW01_18255 0.63 +0.4 765,429 + CSW01_18255 0.69 +1.4 765,436 + CSW01_18255 0.70 -0.5 765,593 + CSW01_18255 0.80 +0.4 765,635 - CSW01_18255 0.82 +0.0 765,707 + CSW01_18255 0.87 +0.9 765,715 - CSW01_18255 0.87 -0.5 765,715 - CSW01_18255 0.87 +0.2 765,830 + +0.9 765,830 + -1.1 765,830 + -0.3 765,830 + -1.2 765,830 + -0.4 765,830 + +0.2 765,830 + -0.5 765,838 - +0.8 765,838 - -0.5 765,838 - -0.4 765,847 + -0.3 765,925 + +0.3 765,925 + +1.3 765,933 - -0.8 765,941 - -0.8 765,993 + CSW01_18260 0.21 -1.2 765,993 + CSW01_18260 0.21 -1.3 766,001 - CSW01_18260 0.25 -2.9 766,001 - CSW01_18260 0.25 +0.5 766,001 - CSW01_18260 0.25 +0.5 766,008 + CSW01_18260 0.29 -0.5 766,014 + CSW01_18260 0.31 -1.1 766,027 + CSW01_18260 0.38 -0.7 766,049 + CSW01_18260 0.48 -0.5 766,138 + +1.3 766,146 - +0.7 766,152 - -1.8 766,152 - +1.6 766,157 - +0.7 766,255 + -1.1 766,255 + +0.0 766,273 - -1.3 766,375 + -1.7 766,455 + CSW01_18265 0.15 -0.5 766,550 + CSW01_18265 0.22 +0.3 766,558 - CSW01_18265 0.23 +1.2 766,558 - CSW01_18265 0.23 -1.3 766,596 + CSW01_18265 0.25 +1.0 766,630 + CSW01_18265 0.28 -0.7 766,686 + CSW01_18265 0.32 +0.4 766,700 + CSW01_18265 0.33 -2.5 766,714 + CSW01_18265 0.34 -0.9 766,719 + CSW01_18265 0.34 -1.6 766,771 - CSW01_18265 0.38 -0.4 766,839 - CSW01_18265 0.42 -0.6 766,897 - CSW01_18265 0.46 +1.9 766,938 + CSW01_18265 0.49 -2.1 766,952 - CSW01_18265 0.50 -1.8 766,973 + CSW01_18265 0.52 -1.3 766,978 + CSW01_18265 0.52 -0.3 766,986 - CSW01_18265 0.53 +0.2 766,986 - CSW01_18265 0.53 -1.1 767,037 + CSW01_18265 0.56 -0.3 767,045 - CSW01_18265 0.57 -2.8
Or see this region's nucleotide sequence