Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18205

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18200 and CSW01_18205 are separated by 145 nucleotidesCSW01_18205 and CSW01_18210 are separated by 273 nucleotides CSW01_18200: CSW01_18200 - ABC transporter substrate-binding protein, at 749,672 to 750,508 _18200 CSW01_18205: CSW01_18205 - dehydratase, at 750,654 to 751,346 _18205 CSW01_18210: CSW01_18210 - cryptochrome/photolyase family protein, at 751,620 to 753,170 _18210 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.740 kb on - strandat 749.955 kb on + strand, within CSW01_18200at 749.955 kb on + strand, within CSW01_18200at 749.955 kb on + strand, within CSW01_18200at 749.963 kb on - strand, within CSW01_18200at 750.006 kb on - strand, within CSW01_18200at 750.006 kb on - strand, within CSW01_18200at 750.039 kb on - strand, within CSW01_18200at 750.039 kb on - strand, within CSW01_18200at 750.079 kb on - strand, within CSW01_18200at 750.350 kb on + strand, within CSW01_18200at 750.418 kb on - strand, within CSW01_18200at 750.503 kb on - strandat 750.563 kb on - strandat 750.574 kb on + strandat 750.574 kb on + strandat 750.598 kb on + strandat 750.630 kb on + strandat 750.630 kb on + strandat 750.652 kb on + strandat 750.736 kb on + strand, within CSW01_18205at 751.096 kb on + strand, within CSW01_18205at 751.098 kb on + strand, within CSW01_18205at 751.141 kb on + strand, within CSW01_18205at 751.203 kb on + strand, within CSW01_18205at 751.246 kb on + strand, within CSW01_18205at 751.260 kb on - strand, within CSW01_18205at 751.267 kb on + strand, within CSW01_18205at 751.421 kb on - strandat 751.530 kb on + strandat 751.565 kb on + strandat 751.573 kb on - strandat 751.573 kb on - strandat 751.681 kb on - strandat 751.698 kb on - strandat 751.757 kb on + strandat 751.791 kb on + strand, within CSW01_18210at 751.804 kb on + strand, within CSW01_18210at 751.834 kb on + strand, within CSW01_18210at 751.884 kb on - strand, within CSW01_18210at 751.916 kb on + strand, within CSW01_18210at 751.992 kb on - strand, within CSW01_18210at 751.997 kb on - strand, within CSW01_18210at 751.999 kb on + strand, within CSW01_18210at 752.007 kb on - strand, within CSW01_18210at 752.195 kb on + strand, within CSW01_18210at 752.271 kb on + strand, within CSW01_18210at 752.271 kb on + strand, within CSW01_18210at 752.271 kb on + strand, within CSW01_18210at 752.271 kb on + strand, within CSW01_18210at 752.279 kb on - strand, within CSW01_18210at 752.279 kb on - strand, within CSW01_18210

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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749,740 - +0.6
749,955 + CSW01_18200 0.34 -0.5
749,955 + CSW01_18200 0.34 -2.5
749,955 + CSW01_18200 0.34 +0.0
749,963 - CSW01_18200 0.35 -0.7
750,006 - CSW01_18200 0.40 +0.2
750,006 - CSW01_18200 0.40 -1.0
750,039 - CSW01_18200 0.44 -0.1
750,039 - CSW01_18200 0.44 +1.0
750,079 - CSW01_18200 0.49 -0.4
750,350 + CSW01_18200 0.81 -0.4
750,418 - CSW01_18200 0.89 +0.1
750,503 - +1.9
750,563 - -0.4
750,574 + +0.7
750,574 + +0.7
750,598 + -0.1
750,630 + +1.0
750,630 + +0.4
750,652 + -1.4
750,736 + CSW01_18205 0.12 +0.8
751,096 + CSW01_18205 0.64 +0.9
751,098 + CSW01_18205 0.64 +1.1
751,141 + CSW01_18205 0.70 +0.4
751,203 + CSW01_18205 0.79 +1.2
751,246 + CSW01_18205 0.85 +2.0
751,260 - CSW01_18205 0.87 +2.1
751,267 + CSW01_18205 0.88 +1.2
751,421 - -2.1
751,530 + -2.6
751,565 + -1.5
751,573 - -2.3
751,573 - -2.0
751,681 - +1.2
751,698 - -0.3
751,757 + -0.7
751,791 + CSW01_18210 0.11 +0.7
751,804 + CSW01_18210 0.12 -0.2
751,834 + CSW01_18210 0.14 -0.1
751,884 - CSW01_18210 0.17 +1.3
751,916 + CSW01_18210 0.19 +0.0
751,992 - CSW01_18210 0.24 -3.5
751,997 - CSW01_18210 0.24 +2.2
751,999 + CSW01_18210 0.24 +0.7
752,007 - CSW01_18210 0.25 -0.0
752,195 + CSW01_18210 0.37 -2.6
752,271 + CSW01_18210 0.42 +0.1
752,271 + CSW01_18210 0.42 -0.7
752,271 + CSW01_18210 0.42 +1.6
752,271 + CSW01_18210 0.42 -1.9
752,279 - CSW01_18210 0.42 -0.4
752,279 - CSW01_18210 0.42 +0.4

Or see this region's nucleotide sequence