Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18085

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18080 and CSW01_18085 overlap by 4 nucleotidesCSW01_18085 and CSW01_18090 overlap by 50 nucleotidesCSW01_18090 and CSW01_18095 are separated by 89 nucleotides CSW01_18080: CSW01_18080 - ABC transporter permease, at 721,954 to 724,401 _18080 CSW01_18085: CSW01_18085 - ABC transporter, at 724,398 to 725,075 _18085 CSW01_18090: CSW01_18090 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 725,026 to 725,673 _18090 CSW01_18095: CSW01_18095 - enoyl-[acyl-carrier-protein] reductase FabV, at 725,763 to 726,971 _18095 Position (kb) 724 725 726Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 723.446 kb on + strand, within CSW01_18080at 723.451 kb on + strand, within CSW01_18080at 723.451 kb on + strand, within CSW01_18080at 723.459 kb on - strand, within CSW01_18080at 723.505 kb on - strand, within CSW01_18080at 723.549 kb on - strand, within CSW01_18080at 723.583 kb on + strand, within CSW01_18080at 723.584 kb on - strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.591 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.623 kb on + strand, within CSW01_18080at 723.635 kb on + strand, within CSW01_18080at 723.640 kb on + strand, within CSW01_18080at 723.640 kb on + strand, within CSW01_18080at 723.650 kb on - strand, within CSW01_18080at 723.661 kb on + strand, within CSW01_18080at 723.674 kb on - strand, within CSW01_18080at 723.719 kb on - strand, within CSW01_18080at 723.719 kb on - strand, within CSW01_18080at 723.751 kb on + strand, within CSW01_18080at 723.751 kb on + strand, within CSW01_18080at 723.759 kb on - strand, within CSW01_18080at 723.819 kb on + strand, within CSW01_18080at 723.869 kb on - strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.891 kb on + strand, within CSW01_18080at 723.891 kb on - strand, within CSW01_18080at 723.899 kb on - strand, within CSW01_18080at 724.002 kb on - strand, within CSW01_18080at 724.068 kb on - strand, within CSW01_18080at 724.113 kb on - strand, within CSW01_18080at 724.171 kb on - strandat 724.221 kb on + strandat 724.229 kb on - strandat 724.251 kb on - strandat 724.300 kb on + strandat 724.305 kb on + strandat 724.305 kb on + strandat 724.305 kb on + strandat 724.308 kb on - strandat 724.409 kb on + strandat 724.467 kb on - strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.662 kb on - strand, within CSW01_18085at 724.666 kb on + strand, within CSW01_18085at 724.687 kb on + strand, within CSW01_18085at 724.695 kb on - strand, within CSW01_18085at 724.695 kb on - strand, within CSW01_18085at 724.705 kb on - strand, within CSW01_18085at 724.829 kb on - strand, within CSW01_18085at 724.836 kb on + strand, within CSW01_18085at 724.880 kb on - strand, within CSW01_18085at 724.907 kb on - strand, within CSW01_18085at 724.915 kb on + strand, within CSW01_18085at 724.923 kb on - strand, within CSW01_18085at 724.948 kb on - strand, within CSW01_18085at 725.005 kb on - strand, within CSW01_18085at 725.016 kb on + strandat 725.029 kb on - strandat 725.043 kb on - strandat 725.109 kb on + strand, within CSW01_18090at 725.156 kb on + strand, within CSW01_18090at 725.167 kb on + strand, within CSW01_18090at 725.175 kb on - strand, within CSW01_18090at 725.238 kb on - strand, within CSW01_18090at 725.320 kb on - strand, within CSW01_18090at 725.322 kb on + strand, within CSW01_18090at 725.330 kb on - strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090at 725.449 kb on + strand, within CSW01_18090at 725.482 kb on + strand, within CSW01_18090at 725.482 kb on + strand, within CSW01_18090at 725.490 kb on - strand, within CSW01_18090at 725.503 kb on - strand, within CSW01_18090at 725.505 kb on + strand, within CSW01_18090at 725.553 kb on - strand, within CSW01_18090at 725.579 kb on - strand, within CSW01_18090at 725.579 kb on - strand, within CSW01_18090at 725.594 kb on - strand, within CSW01_18090at 725.608 kb on - strand, within CSW01_18090at 725.614 kb on + strandat 725.625 kb on + strandat 725.633 kb on - strandat 725.647 kb on + strandat 725.758 kb on + strandat 725.935 kb on + strand, within CSW01_18095at 725.935 kb on + strand, within CSW01_18095at 725.943 kb on - strand, within CSW01_18095at 725.943 kb on - strand, within CSW01_18095at 725.954 kb on - strand, within CSW01_18095at 725.983 kb on + strand, within CSW01_18095at 725.997 kb on - strand, within CSW01_18095at 726.019 kb on - strand, within CSW01_18095at 726.025 kb on - strand, within CSW01_18095at 726.027 kb on - strand, within CSW01_18095

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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723,446 + CSW01_18080 0.61 +0.2
723,451 + CSW01_18080 0.61 -2.1
723,451 + CSW01_18080 0.61 +2.5
723,459 - CSW01_18080 0.61 +0.4
723,505 - CSW01_18080 0.63 -1.4
723,549 - CSW01_18080 0.65 +0.8
723,583 + CSW01_18080 0.67 +1.3
723,584 - CSW01_18080 0.67 +1.5
723,588 + CSW01_18080 0.67 +1.5
723,588 + CSW01_18080 0.67 +1.0
723,588 + CSW01_18080 0.67 +0.6
723,588 + CSW01_18080 0.67 +1.3
723,588 + CSW01_18080 0.67 -1.0
723,588 + CSW01_18080 0.67 -1.7
723,588 + CSW01_18080 0.67 +3.0
723,588 + CSW01_18080 0.67 -0.7
723,588 + CSW01_18080 0.67 +0.2
723,588 + CSW01_18080 0.67 +0.4
723,588 + CSW01_18080 0.67 +2.8
723,588 + CSW01_18080 0.67 +1.4
723,588 + CSW01_18080 0.67 -0.3
723,588 + CSW01_18080 0.67 -0.3
723,588 + CSW01_18080 0.67 -4.0
723,591 - CSW01_18080 0.67 -2.7
723,596 - CSW01_18080 0.67 -0.4
723,596 - CSW01_18080 0.67 -2.1
723,596 - CSW01_18080 0.67 -2.2
723,596 - CSW01_18080 0.67 -0.5
723,596 - CSW01_18080 0.67 +0.3
723,596 - CSW01_18080 0.67 +0.0
723,596 - CSW01_18080 0.67 -1.9
723,596 - CSW01_18080 0.67 +1.1
723,596 - CSW01_18080 0.67 -1.2
723,596 - CSW01_18080 0.67 +0.9
723,596 - CSW01_18080 0.67 -0.4
723,596 - CSW01_18080 0.67 +1.0
723,596 - CSW01_18080 0.67 -1.0
723,596 - CSW01_18080 0.67 -1.5
723,623 + CSW01_18080 0.68 +0.9
723,635 + CSW01_18080 0.69 -2.0
723,640 + CSW01_18080 0.69 +0.1
723,640 + CSW01_18080 0.69 -1.2
723,650 - CSW01_18080 0.69 -0.1
723,661 + CSW01_18080 0.70 +0.8
723,674 - CSW01_18080 0.70 -1.2
723,719 - CSW01_18080 0.72 -2.2
723,719 - CSW01_18080 0.72 +0.6
723,751 + CSW01_18080 0.73 -0.4
723,751 + CSW01_18080 0.73 +0.0
723,759 - CSW01_18080 0.74 +2.1
723,819 + CSW01_18080 0.76 -3.7
723,869 - CSW01_18080 0.78 +1.4
723,873 + CSW01_18080 0.78 -0.3
723,873 + CSW01_18080 0.78 +1.4
723,873 + CSW01_18080 0.78 -0.2
723,891 + CSW01_18080 0.79 -0.7
723,891 - CSW01_18080 0.79 -1.9
723,899 - CSW01_18080 0.79 +0.1
724,002 - CSW01_18080 0.84 +0.9
724,068 - CSW01_18080 0.86 -0.6
724,113 - CSW01_18080 0.88 +2.3
724,171 - +0.7
724,221 + -0.6
724,229 - +0.3
724,251 - -1.0
724,300 + -1.1
724,305 + -3.9
724,305 + -1.0
724,305 + +1.7
724,308 - -0.2
724,409 + -2.2
724,467 - CSW01_18085 0.10 +0.3
724,487 + CSW01_18085 0.13 -0.1
724,487 + CSW01_18085 0.13 -1.9
724,487 + CSW01_18085 0.13 -3.0
724,662 - CSW01_18085 0.39 +0.1
724,666 + CSW01_18085 0.40 +0.9
724,687 + CSW01_18085 0.43 +0.8
724,695 - CSW01_18085 0.44 +0.7
724,695 - CSW01_18085 0.44 -2.3
724,705 - CSW01_18085 0.45 -2.6
724,829 - CSW01_18085 0.64 -1.8
724,836 + CSW01_18085 0.65 -2.9
724,880 - CSW01_18085 0.71 -0.2
724,907 - CSW01_18085 0.75 +1.0
724,915 + CSW01_18085 0.76 -0.4
724,923 - CSW01_18085 0.77 +3.7
724,948 - CSW01_18085 0.81 -0.2
725,005 - CSW01_18085 0.90 -1.3
725,016 + +0.9
725,029 - +0.7
725,043 - +0.9
725,109 + CSW01_18090 0.13 -2.6
725,156 + CSW01_18090 0.20 +2.0
725,167 + CSW01_18090 0.22 -4.2
725,175 - CSW01_18090 0.23 -2.6
725,238 - CSW01_18090 0.33 +1.0
725,320 - CSW01_18090 0.45 -1.7
725,322 + CSW01_18090 0.46 +1.8
725,330 - CSW01_18090 0.47 -1.2
725,390 + CSW01_18090 0.56 -1.1
725,390 + CSW01_18090 0.56 -2.2
725,390 + CSW01_18090 0.56 +0.1
725,390 + CSW01_18090 0.56 +0.3
725,390 + CSW01_18090 0.56 +0.6
725,398 - CSW01_18090 0.57 -1.9
725,398 - CSW01_18090 0.57 +1.8
725,449 + CSW01_18090 0.65 +0.0
725,482 + CSW01_18090 0.70 +0.1
725,482 + CSW01_18090 0.70 -0.7
725,490 - CSW01_18090 0.72 +2.1
725,503 - CSW01_18090 0.74 -1.3
725,505 + CSW01_18090 0.74 -0.5
725,553 - CSW01_18090 0.81 +0.3
725,579 - CSW01_18090 0.85 +1.0
725,579 - CSW01_18090 0.85 +0.4
725,594 - CSW01_18090 0.88 -0.4
725,608 - CSW01_18090 0.90 -0.7
725,614 + +0.2
725,625 + +0.1
725,633 - -1.2
725,647 + -1.7
725,758 + +0.7
725,935 + CSW01_18095 0.14 +0.5
725,935 + CSW01_18095 0.14 -1.3
725,943 - CSW01_18095 0.15 +0.1
725,943 - CSW01_18095 0.15 +0.3
725,954 - CSW01_18095 0.16 +0.9
725,983 + CSW01_18095 0.18 -0.5
725,997 - CSW01_18095 0.19 +1.6
726,019 - CSW01_18095 0.21 +0.1
726,025 - CSW01_18095 0.22 -1.2
726,027 - CSW01_18095 0.22 -3.2

Or see this region's nucleotide sequence