Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18070

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18065 and CSW01_18070 are separated by 51 nucleotidesCSW01_18070 and CSW01_18075 are separated by 108 nucleotides CSW01_18065: CSW01_18065 - allophanate hydrolase, at 717,876 to 718,805 _18065 CSW01_18070: CSW01_18070 - FAD-dependent oxidoreductase, at 718,857 to 720,290 _18070 CSW01_18075: CSW01_18075 - nucleotide sugar dehydrogenase, at 720,399 to 721,565 _18075 Position (kb) 718 719 720 721Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 717.998 kb on - strand, within CSW01_18065at 718.084 kb on - strand, within CSW01_18065at 718.237 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.249 kb on + strand, within CSW01_18065at 718.287 kb on + strand, within CSW01_18065at 718.288 kb on + strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.295 kb on - strand, within CSW01_18065at 718.312 kb on + strand, within CSW01_18065at 718.329 kb on + strand, within CSW01_18065at 718.337 kb on - strand, within CSW01_18065at 718.401 kb on + strand, within CSW01_18065at 718.416 kb on + strand, within CSW01_18065at 718.539 kb on + strand, within CSW01_18065at 718.547 kb on - strand, within CSW01_18065at 718.568 kb on - strand, within CSW01_18065at 718.702 kb on + strand, within CSW01_18065at 718.863 kb on + strandat 718.946 kb on + strandat 718.950 kb on - strandat 719.004 kb on - strand, within CSW01_18070at 719.032 kb on + strand, within CSW01_18070at 719.109 kb on + strand, within CSW01_18070at 719.153 kb on - strand, within CSW01_18070at 719.278 kb on + strand, within CSW01_18070at 719.325 kb on - strand, within CSW01_18070at 719.386 kb on + strand, within CSW01_18070at 719.387 kb on - strand, within CSW01_18070at 719.394 kb on - strand, within CSW01_18070at 719.483 kb on - strand, within CSW01_18070at 719.493 kb on - strand, within CSW01_18070at 719.493 kb on - strand, within CSW01_18070at 719.644 kb on + strand, within CSW01_18070at 719.682 kb on + strand, within CSW01_18070at 719.682 kb on + strand, within CSW01_18070at 719.696 kb on - strand, within CSW01_18070at 719.737 kb on - strand, within CSW01_18070at 719.737 kb on - strand, within CSW01_18070at 719.769 kb on - strand, within CSW01_18070at 719.782 kb on - strand, within CSW01_18070at 719.782 kb on - strand, within CSW01_18070at 719.865 kb on - strand, within CSW01_18070at 719.910 kb on - strand, within CSW01_18070at 720.026 kb on - strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.035 kb on + strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.043 kb on - strand, within CSW01_18070at 720.049 kb on + strand, within CSW01_18070at 720.099 kb on - strand, within CSW01_18070at 720.162 kb on + strandat 720.162 kb on + strandat 720.188 kb on + strandat 720.196 kb on - strandat 720.309 kb on - strandat 720.349 kb on - strandat 720.386 kb on - strandat 720.386 kb on - strandat 720.405 kb on - strandat 720.416 kb on + strandat 720.493 kb on + strandat 720.493 kb on + strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.501 kb on - strandat 720.557 kb on - strand, within CSW01_18075at 720.594 kb on - strand, within CSW01_18075at 720.755 kb on - strand, within CSW01_18075at 720.860 kb on + strand, within CSW01_18075at 721.110 kb on - strand, within CSW01_18075at 721.121 kb on + strand, within CSW01_18075at 721.195 kb on + strand, within CSW01_18075at 721.226 kb on + strand, within CSW01_18075at 721.234 kb on - strand, within CSW01_18075

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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717,998 - CSW01_18065 0.13 +1.2
718,084 - CSW01_18065 0.22 +0.4
718,237 + CSW01_18065 0.39 -0.3
718,249 + CSW01_18065 0.40 +0.0
718,249 + CSW01_18065 0.40 +1.1
718,249 + CSW01_18065 0.40 -0.2
718,249 + CSW01_18065 0.40 +0.3
718,249 + CSW01_18065 0.40 +0.4
718,249 + CSW01_18065 0.40 -1.4
718,287 + CSW01_18065 0.44 +0.3
718,288 + CSW01_18065 0.44 +1.4
718,295 - CSW01_18065 0.45 +0.8
718,295 - CSW01_18065 0.45 +0.4
718,295 - CSW01_18065 0.45 -1.1
718,312 + CSW01_18065 0.47 -1.8
718,329 + CSW01_18065 0.49 +1.1
718,337 - CSW01_18065 0.50 -1.1
718,401 + CSW01_18065 0.56 -0.3
718,416 + CSW01_18065 0.58 +0.3
718,539 + CSW01_18065 0.71 -0.0
718,547 - CSW01_18065 0.72 -0.1
718,568 - CSW01_18065 0.74 +2.0
718,702 + CSW01_18065 0.89 +1.6
718,863 + -0.5
718,946 + +1.6
718,950 - -0.4
719,004 - CSW01_18070 0.10 -0.9
719,032 + CSW01_18070 0.12 -0.0
719,109 + CSW01_18070 0.18 -2.1
719,153 - CSW01_18070 0.21 +1.8
719,278 + CSW01_18070 0.29 -1.0
719,325 - CSW01_18070 0.33 -1.6
719,386 + CSW01_18070 0.37 -2.1
719,387 - CSW01_18070 0.37 -0.1
719,394 - CSW01_18070 0.37 -0.9
719,483 - CSW01_18070 0.44 -2.7
719,493 - CSW01_18070 0.44 +0.4
719,493 - CSW01_18070 0.44 +0.7
719,644 + CSW01_18070 0.55 -2.3
719,682 + CSW01_18070 0.58 -0.3
719,682 + CSW01_18070 0.58 -1.4
719,696 - CSW01_18070 0.59 -0.4
719,737 - CSW01_18070 0.61 +1.1
719,737 - CSW01_18070 0.61 +0.8
719,769 - CSW01_18070 0.64 -0.4
719,782 - CSW01_18070 0.65 -0.7
719,782 - CSW01_18070 0.65 +0.8
719,865 - CSW01_18070 0.70 -0.6
719,910 - CSW01_18070 0.73 -0.4
720,026 - CSW01_18070 0.82 -2.7
720,035 + CSW01_18070 0.82 +0.6
720,035 + CSW01_18070 0.82 -0.2
720,035 + CSW01_18070 0.82 -0.0
720,043 - CSW01_18070 0.83 +0.5
720,043 - CSW01_18070 0.83 -2.4
720,043 - CSW01_18070 0.83 -0.7
720,043 - CSW01_18070 0.83 -0.6
720,049 + CSW01_18070 0.83 +0.0
720,099 - CSW01_18070 0.87 +2.8
720,162 + -1.4
720,162 + -0.6
720,188 + +0.0
720,196 - -0.0
720,309 - +1.0
720,349 - -0.7
720,386 - -4.2
720,386 - +0.6
720,405 - +0.6
720,416 + -0.2
720,493 + -2.0
720,493 + -2.4
720,501 - -1.2
720,501 - +0.2
720,501 - +0.5
720,501 - +0.6
720,557 - CSW01_18075 0.14 +3.5
720,594 - CSW01_18075 0.17 +0.7
720,755 - CSW01_18075 0.31 -0.8
720,860 + CSW01_18075 0.40 -0.7
721,110 - CSW01_18075 0.61 -0.5
721,121 + CSW01_18075 0.62 +0.8
721,195 + CSW01_18075 0.68 -1.3
721,226 + CSW01_18075 0.71 +1.2
721,234 - CSW01_18075 0.72 -0.6

Or see this region's nucleotide sequence