Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17760

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17750 and CSW01_17755 overlap by 8 nucleotidesCSW01_17755 and CSW01_17760 are separated by 55 nucleotidesCSW01_17760 and CSW01_17765 are separated by 186 nucleotides CSW01_17750: CSW01_17750 - cytochrome B, at 657,037 to 657,354 _17750 CSW01_17755: CSW01_17755 - cytochrome B, at 657,347 to 657,883 _17755 CSW01_17760: CSW01_17760 - DNA helicase IV, at 657,939 to 660,002 _17760 CSW01_17765: CSW01_17765 - TIGR01666 family membrane protein, at 660,189 to 662,366 _17765 Position (kb) 657 658 659 660 661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 656.972 kb on - strandat 657.036 kb on + strandat 657.044 kb on - strandat 657.046 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.053 kb on + strandat 657.061 kb on - strandat 657.061 kb on - strandat 657.061 kb on - strandat 657.115 kb on + strand, within CSW01_17750at 657.355 kb on + strandat 657.363 kb on + strandat 657.363 kb on - strandat 657.518 kb on - strand, within CSW01_17755at 657.532 kb on + strand, within CSW01_17755at 657.566 kb on + strand, within CSW01_17755at 657.574 kb on + strand, within CSW01_17755at 657.582 kb on - strand, within CSW01_17755at 657.582 kb on - strand, within CSW01_17755at 657.612 kb on - strand, within CSW01_17755at 657.614 kb on + strand, within CSW01_17755at 657.614 kb on + strand, within CSW01_17755at 657.616 kb on + strand, within CSW01_17755at 657.714 kb on - strand, within CSW01_17755at 657.723 kb on + strand, within CSW01_17755at 657.731 kb on - strand, within CSW01_17755at 657.731 kb on - strand, within CSW01_17755at 657.731 kb on - strand, within CSW01_17755at 657.747 kb on + strand, within CSW01_17755at 657.752 kb on + strand, within CSW01_17755at 657.827 kb on - strand, within CSW01_17755at 657.867 kb on + strandat 657.978 kb on + strandat 658.048 kb on + strandat 658.056 kb on - strandat 658.093 kb on + strandat 658.123 kb on + strandat 658.478 kb on + strand, within CSW01_17760at 658.830 kb on + strand, within CSW01_17760at 658.830 kb on + strand, within CSW01_17760at 658.830 kb on + strand, within CSW01_17760at 658.962 kb on - strand, within CSW01_17760at 659.009 kb on + strand, within CSW01_17760at 659.059 kb on - strand, within CSW01_17760at 659.076 kb on - strand, within CSW01_17760at 659.145 kb on + strand, within CSW01_17760at 659.167 kb on - strand, within CSW01_17760at 659.175 kb on - strand, within CSW01_17760at 659.234 kb on - strand, within CSW01_17760at 659.325 kb on + strand, within CSW01_17760at 659.333 kb on - strand, within CSW01_17760at 659.354 kb on - strand, within CSW01_17760at 659.376 kb on - strand, within CSW01_17760at 659.383 kb on + strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.427 kb on + strand, within CSW01_17760at 659.470 kb on + strand, within CSW01_17760at 659.586 kb on + strand, within CSW01_17760at 659.591 kb on + strand, within CSW01_17760at 659.770 kb on + strand, within CSW01_17760at 659.826 kb on + strandat 659.856 kb on + strandat 660.012 kb on - strandat 660.055 kb on - strandat 660.150 kb on + strandat 660.165 kb on + strandat 660.258 kb on + strandat 660.258 kb on + strandat 660.266 kb on - strandat 660.266 kb on - strandat 660.266 kb on - strandat 660.287 kb on + strandat 660.311 kb on + strandat 660.455 kb on + strand, within CSW01_17765at 660.578 kb on - strand, within CSW01_17765at 660.592 kb on - strand, within CSW01_17765at 660.608 kb on + strand, within CSW01_17765at 660.658 kb on - strand, within CSW01_17765at 660.688 kb on - strand, within CSW01_17765at 660.818 kb on + strand, within CSW01_17765at 660.840 kb on + strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.859 kb on - strand, within CSW01_17765at 660.859 kb on - strand, within CSW01_17765at 660.872 kb on - strand, within CSW01_17765at 660.874 kb on + strand, within CSW01_17765at 660.882 kb on - strand, within CSW01_17765at 660.887 kb on - strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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656,972 - +0.5
657,036 + -1.5
657,044 - +0.4
657,046 + -2.0
657,053 + +2.1
657,053 + -3.3
657,053 + +0.7
657,053 + -2.6
657,053 + -0.4
657,053 + -2.1
657,053 + -0.1
657,053 + -1.5
657,061 - -2.1
657,061 - -0.8
657,061 - +0.6
657,115 + CSW01_17750 0.25 -0.9
657,355 + +1.1
657,363 + +1.4
657,363 - -1.9
657,518 - CSW01_17755 0.32 -0.9
657,532 + CSW01_17755 0.34 -1.3
657,566 + CSW01_17755 0.41 +0.4
657,574 + CSW01_17755 0.42 -0.8
657,582 - CSW01_17755 0.44 +1.2
657,582 - CSW01_17755 0.44 -1.1
657,612 - CSW01_17755 0.49 -1.5
657,614 + CSW01_17755 0.50 +0.7
657,614 + CSW01_17755 0.50 +0.3
657,616 + CSW01_17755 0.50 +1.1
657,714 - CSW01_17755 0.68 -2.5
657,723 + CSW01_17755 0.70 +0.6
657,731 - CSW01_17755 0.72 -0.0
657,731 - CSW01_17755 0.72 -3.0
657,731 - CSW01_17755 0.72 -0.0
657,747 + CSW01_17755 0.74 +0.6
657,752 + CSW01_17755 0.75 -0.8
657,827 - CSW01_17755 0.89 -0.3
657,867 + +0.2
657,978 + -2.4
658,048 + +2.1
658,056 - -0.1
658,093 + -2.7
658,123 + -1.3
658,478 + CSW01_17760 0.26 -2.1
658,830 + CSW01_17760 0.43 -2.3
658,830 + CSW01_17760 0.43 -0.2
658,830 + CSW01_17760 0.43 -0.8
658,962 - CSW01_17760 0.50 -2.0
659,009 + CSW01_17760 0.52 +0.6
659,059 - CSW01_17760 0.54 +0.5
659,076 - CSW01_17760 0.55 +1.5
659,145 + CSW01_17760 0.58 +0.6
659,167 - CSW01_17760 0.59 -0.1
659,175 - CSW01_17760 0.60 -2.7
659,234 - CSW01_17760 0.63 +0.6
659,325 + CSW01_17760 0.67 -0.3
659,333 - CSW01_17760 0.68 +1.7
659,354 - CSW01_17760 0.69 +0.9
659,376 - CSW01_17760 0.70 -1.6
659,383 + CSW01_17760 0.70 -2.9
659,391 - CSW01_17760 0.70 +1.0
659,391 - CSW01_17760 0.70 +0.5
659,391 - CSW01_17760 0.70 +0.6
659,427 + CSW01_17760 0.72 +0.2
659,470 + CSW01_17760 0.74 +0.2
659,586 + CSW01_17760 0.80 +1.5
659,591 + CSW01_17760 0.80 -0.9
659,770 + CSW01_17760 0.89 +0.1
659,826 + +0.4
659,856 + -4.0
660,012 - -0.6
660,055 - -0.3
660,150 + -2.2
660,165 + +0.5
660,258 + -0.4
660,258 + -2.9
660,266 - -0.1
660,266 - -2.4
660,266 - +1.1
660,287 + +0.6
660,311 + -1.1
660,455 + CSW01_17765 0.12 -1.0
660,578 - CSW01_17765 0.18 -2.2
660,592 - CSW01_17765 0.19 +1.8
660,608 + CSW01_17765 0.19 +1.3
660,658 - CSW01_17765 0.22 +0.3
660,688 - CSW01_17765 0.23 -2.0
660,818 + CSW01_17765 0.29 -0.1
660,840 + CSW01_17765 0.30 +0.4
660,849 - CSW01_17765 0.30 +0.4
660,849 - CSW01_17765 0.30 +1.2
660,849 - CSW01_17765 0.30 +0.1
660,859 - CSW01_17765 0.31 -0.7
660,859 - CSW01_17765 0.31 -0.1
660,872 - CSW01_17765 0.31 +0.7
660,874 + CSW01_17765 0.31 +2.1
660,882 - CSW01_17765 0.32 +0.6
660,887 - CSW01_17765 0.32 +2.0
660,888 + CSW01_17765 0.32 +2.0
660,888 + CSW01_17765 0.32 -2.0
660,888 + CSW01_17765 0.32 -0.4

Or see this region's nucleotide sequence