Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17710

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17705 and CSW01_17710 overlap by 4 nucleotidesCSW01_17710 and CSW01_17715 are separated by 246 nucleotides CSW01_17705: CSW01_17705 - two-component sensor histidine kinase, at 643,988 to 646,357 _17705 CSW01_17710: CSW01_17710 - phosphoglycerate transport regulatory protein PgtC, at 646,354 to 647,676 _17710 CSW01_17715: CSW01_17715 - MFS transporter, at 647,923 to 649,302 _17715 Position (kb) 646 647 648Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.381 kb on - strand, within CSW01_17705at 645.386 kb on - strand, within CSW01_17705at 645.488 kb on - strand, within CSW01_17705at 645.490 kb on + strand, within CSW01_17705at 645.544 kb on + strand, within CSW01_17705at 645.552 kb on - strand, within CSW01_17705at 645.587 kb on + strand, within CSW01_17705at 645.815 kb on + strand, within CSW01_17705at 645.860 kb on + strand, within CSW01_17705at 645.894 kb on - strand, within CSW01_17705at 645.942 kb on - strand, within CSW01_17705at 645.942 kb on - strand, within CSW01_17705at 645.951 kb on + strand, within CSW01_17705at 645.955 kb on - strand, within CSW01_17705at 645.975 kb on + strand, within CSW01_17705at 645.983 kb on - strand, within CSW01_17705at 646.162 kb on + strandat 646.170 kb on - strandat 646.170 kb on - strandat 646.199 kb on + strandat 646.250 kb on + strandat 646.268 kb on - strandat 646.274 kb on + strandat 646.274 kb on + strandat 646.274 kb on + strandat 646.282 kb on - strandat 646.329 kb on - strandat 646.329 kb on - strandat 646.329 kb on - strandat 646.496 kb on - strand, within CSW01_17710at 646.557 kb on - strand, within CSW01_17710at 646.580 kb on - strand, within CSW01_17710at 646.607 kb on + strand, within CSW01_17710at 646.812 kb on - strand, within CSW01_17710at 646.812 kb on - strand, within CSW01_17710at 646.814 kb on + strand, within CSW01_17710at 646.992 kb on - strand, within CSW01_17710at 647.029 kb on + strand, within CSW01_17710at 647.108 kb on - strand, within CSW01_17710at 647.137 kb on - strand, within CSW01_17710at 647.139 kb on + strand, within CSW01_17710at 647.144 kb on + strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.233 kb on + strand, within CSW01_17710at 647.241 kb on - strand, within CSW01_17710at 647.253 kb on - strand, within CSW01_17710at 647.364 kb on + strand, within CSW01_17710at 647.426 kb on - strand, within CSW01_17710at 647.442 kb on - strand, within CSW01_17710at 647.506 kb on + strand, within CSW01_17710at 647.527 kb on + strand, within CSW01_17710at 647.527 kb on - strand, within CSW01_17710at 647.573 kb on + strandat 647.578 kb on + strandat 647.612 kb on - strandat 647.612 kb on - strandat 647.616 kb on + strandat 647.729 kb on - strandat 647.734 kb on - strandat 647.812 kb on + strandat 647.912 kb on + strandat 647.967 kb on - strandat 648.121 kb on - strand, within CSW01_17715at 648.255 kb on - strand, within CSW01_17715at 648.264 kb on + strand, within CSW01_17715at 648.294 kb on + strand, within CSW01_17715at 648.309 kb on - strand, within CSW01_17715at 648.315 kb on + strand, within CSW01_17715at 648.329 kb on + strand, within CSW01_17715at 648.334 kb on + strand, within CSW01_17715at 648.337 kb on - strand, within CSW01_17715at 648.358 kb on - strand, within CSW01_17715at 648.368 kb on + strand, within CSW01_17715at 648.376 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.535 kb on - strand, within CSW01_17715at 648.571 kb on + strand, within CSW01_17715at 648.648 kb on - strand, within CSW01_17715

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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645,373 + CSW01_17705 0.58 -3.1
645,373 + CSW01_17705 0.58 +0.4
645,373 + CSW01_17705 0.58 -0.9
645,373 + CSW01_17705 0.58 -0.2
645,373 + CSW01_17705 0.58 +0.3
645,381 - CSW01_17705 0.59 -0.7
645,386 - CSW01_17705 0.59 +1.3
645,488 - CSW01_17705 0.63 -0.9
645,490 + CSW01_17705 0.63 -2.5
645,544 + CSW01_17705 0.66 +0.1
645,552 - CSW01_17705 0.66 +0.8
645,587 + CSW01_17705 0.67 +0.1
645,815 + CSW01_17705 0.77 -1.0
645,860 + CSW01_17705 0.79 +0.6
645,894 - CSW01_17705 0.80 -2.1
645,942 - CSW01_17705 0.82 -1.8
645,942 - CSW01_17705 0.82 -1.8
645,951 + CSW01_17705 0.83 +0.3
645,955 - CSW01_17705 0.83 +1.1
645,975 + CSW01_17705 0.84 +0.2
645,983 - CSW01_17705 0.84 -1.4
646,162 + +0.9
646,170 - +1.1
646,170 - -1.1
646,199 + -0.7
646,250 + -3.6
646,268 - +0.6
646,274 + -2.3
646,274 + -0.7
646,274 + -1.9
646,282 - -0.6
646,329 - +1.7
646,329 - -1.6
646,329 - +0.8
646,496 - CSW01_17710 0.11 +2.4
646,557 - CSW01_17710 0.15 -0.2
646,580 - CSW01_17710 0.17 +0.4
646,607 + CSW01_17710 0.19 -0.4
646,812 - CSW01_17710 0.35 -2.9
646,812 - CSW01_17710 0.35 -0.7
646,814 + CSW01_17710 0.35 +0.5
646,992 - CSW01_17710 0.48 -1.0
647,029 + CSW01_17710 0.51 -2.8
647,108 - CSW01_17710 0.57 +1.3
647,137 - CSW01_17710 0.59 -1.3
647,139 + CSW01_17710 0.59 +0.2
647,144 + CSW01_17710 0.60 +1.1
647,152 - CSW01_17710 0.60 +1.5
647,152 - CSW01_17710 0.60 +0.5
647,233 + CSW01_17710 0.66 +1.1
647,241 - CSW01_17710 0.67 -2.5
647,253 - CSW01_17710 0.68 -0.3
647,364 + CSW01_17710 0.76 +0.2
647,426 - CSW01_17710 0.81 +1.2
647,442 - CSW01_17710 0.82 -0.1
647,506 + CSW01_17710 0.87 +0.5
647,527 + CSW01_17710 0.89 +1.0
647,527 - CSW01_17710 0.89 -2.9
647,573 + -0.3
647,578 + -2.0
647,612 - -0.3
647,612 - +1.2
647,616 + +0.6
647,729 - -3.0
647,734 - -0.5
647,812 + +1.2
647,912 + +1.3
647,967 - -1.5
648,121 - CSW01_17715 0.14 +0.9
648,255 - CSW01_17715 0.24 +0.8
648,264 + CSW01_17715 0.25 +0.1
648,294 + CSW01_17715 0.27 +0.2
648,309 - CSW01_17715 0.28 -2.9
648,315 + CSW01_17715 0.28 -1.7
648,329 + CSW01_17715 0.29 -0.5
648,334 + CSW01_17715 0.30 -3.8
648,337 - CSW01_17715 0.30 +1.1
648,358 - CSW01_17715 0.32 -2.3
648,368 + CSW01_17715 0.32 +0.2
648,376 - CSW01_17715 0.33 +1.5
648,489 - CSW01_17715 0.41 +0.8
648,489 - CSW01_17715 0.41 +0.4
648,535 - CSW01_17715 0.44 -1.8
648,571 + CSW01_17715 0.47 +2.9
648,648 - CSW01_17715 0.53 -3.2

Or see this region's nucleotide sequence