Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17530 and CSW01_17535 are separated by 97 nucleotides CSW01_17535 and CSW01_17540 overlap by 50 nucleotides
CSW01_17530: CSW01_17530 - anaerobic C4-dicarboxylate transporter DcuC, at 598,894 to 600,273
_17530
CSW01_17535: CSW01_17535 - L-serine ammonia-lyase, at 600,371 to 601,801
_17535
CSW01_17540: CSW01_17540 - sodium:solute symporter, at 601,752 to 603,293
_17540
Position (kb) 600
601
602 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 599.389 kb on + strand, within CSW01_17530 at 599.511 kb on - strand, within CSW01_17530 at 599.638 kb on + strand, within CSW01_17530 at 599.720 kb on + strand, within CSW01_17530 at 599.800 kb on + strand, within CSW01_17530 at 599.800 kb on + strand, within CSW01_17530 at 599.832 kb on + strand, within CSW01_17530 at 599.840 kb on - strand, within CSW01_17530 at 599.911 kb on + strand, within CSW01_17530 at 599.911 kb on + strand, within CSW01_17530 at 599.919 kb on - strand, within CSW01_17530 at 600.174 kb on - strand at 600.208 kb on - strand at 600.229 kb on - strand at 600.242 kb on + strand at 600.242 kb on + strand at 600.242 kb on + strand at 600.245 kb on + strand at 600.355 kb on - strand at 600.517 kb on - strand, within CSW01_17535 at 600.562 kb on + strand, within CSW01_17535 at 600.610 kb on + strand, within CSW01_17535 at 600.610 kb on + strand, within CSW01_17535 at 600.610 kb on + strand, within CSW01_17535 at 600.610 kb on + strand, within CSW01_17535 at 600.618 kb on - strand, within CSW01_17535 at 600.618 kb on - strand, within CSW01_17535 at 600.620 kb on - strand, within CSW01_17535 at 600.686 kb on - strand, within CSW01_17535 at 600.686 kb on - strand, within CSW01_17535 at 600.723 kb on + strand, within CSW01_17535 at 600.822 kb on - strand, within CSW01_17535 at 600.866 kb on + strand, within CSW01_17535 at 600.905 kb on - strand, within CSW01_17535 at 600.949 kb on + strand, within CSW01_17535 at 600.957 kb on - strand, within CSW01_17535 at 600.961 kb on - strand, within CSW01_17535 at 601.208 kb on + strand, within CSW01_17535 at 601.244 kb on - strand, within CSW01_17535 at 601.314 kb on + strand, within CSW01_17535 at 601.498 kb on - strand, within CSW01_17535 at 601.581 kb on + strand, within CSW01_17535 at 601.589 kb on - strand, within CSW01_17535 at 601.758 kb on - strand at 602.083 kb on - strand, within CSW01_17540 at 602.112 kb on + strand, within CSW01_17540 at 602.143 kb on - strand, within CSW01_17540 at 602.199 kb on + strand, within CSW01_17540 at 602.215 kb on + strand, within CSW01_17540 at 602.223 kb on + strand, within CSW01_17540 at 602.312 kb on - strand, within CSW01_17540 at 602.396 kb on + strand, within CSW01_17540 at 602.622 kb on + strand, within CSW01_17540 at 602.759 kb on - strand, within CSW01_17540
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 599,389 + CSW01_17530 0.36 +0.0 599,511 - CSW01_17530 0.45 -1.2 599,638 + CSW01_17530 0.54 -0.1 599,720 + CSW01_17530 0.60 -0.6 599,800 + CSW01_17530 0.66 +0.2 599,800 + CSW01_17530 0.66 +0.6 599,832 + CSW01_17530 0.68 -1.9 599,840 - CSW01_17530 0.69 +1.1 599,911 + CSW01_17530 0.74 -0.5 599,911 + CSW01_17530 0.74 +0.8 599,919 - CSW01_17530 0.74 +0.7 600,174 - +0.1 600,208 - -0.7 600,229 - +0.4 600,242 + -0.7 600,242 + +0.4 600,242 + +1.9 600,245 + -0.7 600,355 - -2.0 600,517 - CSW01_17535 0.10 -0.1 600,562 + CSW01_17535 0.13 -2.5 600,610 + CSW01_17535 0.17 -1.7 600,610 + CSW01_17535 0.17 +1.4 600,610 + CSW01_17535 0.17 +1.3 600,610 + CSW01_17535 0.17 +2.1 600,618 - CSW01_17535 0.17 -0.1 600,618 - CSW01_17535 0.17 +1.6 600,620 - CSW01_17535 0.17 +1.5 600,686 - CSW01_17535 0.22 +0.4 600,686 - CSW01_17535 0.22 -1.7 600,723 + CSW01_17535 0.25 +1.7 600,822 - CSW01_17535 0.32 -2.2 600,866 + CSW01_17535 0.35 +0.9 600,905 - CSW01_17535 0.37 +1.3 600,949 + CSW01_17535 0.40 -2.1 600,957 - CSW01_17535 0.41 -0.2 600,961 - CSW01_17535 0.41 -2.9 601,208 + CSW01_17535 0.58 -0.2 601,244 - CSW01_17535 0.61 -1.1 601,314 + CSW01_17535 0.66 -1.9 601,498 - CSW01_17535 0.79 +1.1 601,581 + CSW01_17535 0.85 +1.2 601,589 - CSW01_17535 0.85 -0.2 601,758 - -2.2 602,083 - CSW01_17540 0.21 +0.4 602,112 + CSW01_17540 0.23 -3.9 602,143 - CSW01_17540 0.25 +0.5 602,199 + CSW01_17540 0.29 +0.0 602,215 + CSW01_17540 0.30 -0.0 602,223 + CSW01_17540 0.31 -0.5 602,312 - CSW01_17540 0.36 -0.0 602,396 + CSW01_17540 0.42 +1.5 602,622 + CSW01_17540 0.56 -0.1 602,759 - CSW01_17540 0.65 -1.2
Or see this region's nucleotide sequence