Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17285 and CSW01_17290 are separated by 92 nucleotides CSW01_17290 and CSW01_17295 are separated by 151 nucleotides
CSW01_17285: CSW01_17285 - peptide-methionine (R)-S-oxide reductase, at 548,136 to 549,320
_17285
CSW01_17290: CSW01_17290 - GTP cyclohydrolase I FolE, at 549,413 to 550,066
_17290
CSW01_17295: CSW01_17295 - molybdopterin molybdotransferase, at 550,218 to 551,453
_17295
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.470 kb on + strand, within CSW01_17285 at 548.563 kb on + strand, within CSW01_17285 at 548.638 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.904 kb on + strand, within CSW01_17285 at 548.912 kb on - strand, within CSW01_17285 at 548.919 kb on + strand, within CSW01_17285 at 549.003 kb on - strand, within CSW01_17285 at 549.183 kb on + strand, within CSW01_17285 at 549.203 kb on - strand at 549.216 kb on - strand at 549.290 kb on - strand at 550.141 kb on - strand at 550.202 kb on + strand at 550.210 kb on - strand at 550.248 kb on - strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.301 kb on - strand at 550.326 kb on + strand at 550.497 kb on + strand, within CSW01_17295 at 550.589 kb on + strand, within CSW01_17295 at 550.620 kb on - strand, within CSW01_17295 at 550.661 kb on + strand, within CSW01_17295 at 550.729 kb on + strand, within CSW01_17295 at 550.790 kb on + strand, within CSW01_17295 at 550.798 kb on - strand, within CSW01_17295 at 550.798 kb on - strand, within CSW01_17295 at 550.798 kb on - strand, within CSW01_17295 at 550.952 kb on - strand, within CSW01_17295 at 551.066 kb on + strand, within CSW01_17295
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 548,470 + CSW01_17285 0.28 +0.8 548,563 + CSW01_17285 0.36 +0.7 548,638 + CSW01_17285 0.42 -1.2 548,883 + CSW01_17285 0.63 +1.1 548,883 + CSW01_17285 0.63 -0.2 548,904 + CSW01_17285 0.65 -1.9 548,912 - CSW01_17285 0.65 +2.3 548,919 + CSW01_17285 0.66 -1.4 549,003 - CSW01_17285 0.73 +1.2 549,183 + CSW01_17285 0.88 +0.7 549,203 - -1.1 549,216 - -2.5 549,290 - +1.4 550,141 - +0.1 550,202 + +1.0 550,210 - +0.9 550,248 - -0.3 550,283 + +0.1 550,283 + -2.1 550,301 - -0.3 550,326 + -3.3 550,497 + CSW01_17295 0.23 +1.7 550,589 + CSW01_17295 0.30 -2.3 550,620 - CSW01_17295 0.33 -0.2 550,661 + CSW01_17295 0.36 -0.0 550,729 + CSW01_17295 0.41 +0.5 550,790 + CSW01_17295 0.46 -2.9 550,798 - CSW01_17295 0.47 +0.4 550,798 - CSW01_17295 0.47 -0.4 550,798 - CSW01_17295 0.47 +2.3 550,952 - CSW01_17295 0.59 -0.4 551,066 + CSW01_17295 0.69 -0.0
Or see this region's nucleotide sequence