Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17020 and CSW01_17025 overlap by 4 nucleotides CSW01_17025 and CSW01_17030 are separated by 355 nucleotides CSW01_17030 and CSW01_17035 are separated by 9 nucleotides
CSW01_17020: CSW01_17020 - hypothetical protein, at 494,879 to 495,862
_17020
CSW01_17025: CSW01_17025 - GGDEF domain-containing protein, at 495,859 to 497,097
_17025
CSW01_17030: CSW01_17030 - competence protein ComFB, at 497,453 to 497,827
_17030
CSW01_17035: CSW01_17035 - transcriptional regulator, at 497,837 to 498,115
_17035
Position (kb) 495
496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 494.891 kb on + strand at 494.913 kb on - strand at 495.149 kb on - strand, within CSW01_17020 at 495.294 kb on - strand, within CSW01_17020 at 495.347 kb on + strand, within CSW01_17020 at 495.355 kb on - strand, within CSW01_17020 at 495.433 kb on + strand, within CSW01_17020 at 495.441 kb on - strand, within CSW01_17020 at 495.467 kb on - strand, within CSW01_17020 at 495.547 kb on - strand, within CSW01_17020 at 495.581 kb on + strand, within CSW01_17020 at 495.587 kb on + strand, within CSW01_17020 at 495.617 kb on + strand, within CSW01_17020 at 495.625 kb on - strand, within CSW01_17020 at 495.632 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.693 kb on - strand, within CSW01_17020 at 495.802 kb on - strand at 495.864 kb on - strand at 495.923 kb on + strand at 495.949 kb on + strand at 495.954 kb on + strand at 495.959 kb on + strand at 495.959 kb on + strand at 495.962 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 495.977 kb on - strand at 496.056 kb on + strand, within CSW01_17025 at 496.094 kb on - strand, within CSW01_17025 at 496.418 kb on + strand, within CSW01_17025 at 496.451 kb on - strand, within CSW01_17025 at 496.484 kb on - strand, within CSW01_17025 at 496.492 kb on + strand, within CSW01_17025 at 496.608 kb on - strand, within CSW01_17025 at 496.655 kb on - strand, within CSW01_17025 at 496.680 kb on - strand, within CSW01_17025 at 496.829 kb on + strand, within CSW01_17025 at 496.877 kb on + strand, within CSW01_17025 at 496.958 kb on + strand, within CSW01_17025 at 496.986 kb on + strand at 497.014 kb on + strand at 497.161 kb on + strand at 497.251 kb on - strand at 497.251 kb on - strand at 497.251 kb on - strand at 497.251 kb on - strand at 497.251 kb on - strand at 497.251 kb on - strand at 497.360 kb on + strand at 497.397 kb on + strand at 497.516 kb on + strand, within CSW01_17030 at 497.524 kb on - strand, within CSW01_17030 at 497.563 kb on - strand, within CSW01_17030 at 497.563 kb on - strand, within CSW01_17030 at 497.565 kb on + strand, within CSW01_17030 at 497.565 kb on + strand, within CSW01_17030 at 497.599 kb on - strand, within CSW01_17030 at 497.692 kb on + strand, within CSW01_17030 at 497.805 kb on + strand at 497.898 kb on - strand, within CSW01_17035
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 494,891 + -1.4 494,913 - +0.1 495,149 - CSW01_17020 0.27 +0.5 495,294 - CSW01_17020 0.42 -0.6 495,347 + CSW01_17020 0.48 +1.0 495,355 - CSW01_17020 0.48 +2.1 495,433 + CSW01_17020 0.56 -1.0 495,441 - CSW01_17020 0.57 -0.6 495,467 - CSW01_17020 0.60 +1.7 495,547 - CSW01_17020 0.68 -3.0 495,581 + CSW01_17020 0.71 +0.4 495,587 + CSW01_17020 0.72 -0.6 495,617 + CSW01_17020 0.75 -0.2 495,625 - CSW01_17020 0.76 +1.0 495,632 - CSW01_17020 0.77 +1.5 495,693 - CSW01_17020 0.83 +0.6 495,693 - CSW01_17020 0.83 +1.2 495,802 - +1.5 495,864 - +0.2 495,923 + -1.2 495,949 + +0.8 495,954 + +0.6 495,959 + +0.2 495,959 + +0.5 495,962 - -2.4 495,977 - -1.9 495,977 - -0.4 495,977 - -0.0 495,977 - -0.2 496,056 + CSW01_17025 0.16 +0.2 496,094 - CSW01_17025 0.19 +0.9 496,418 + CSW01_17025 0.45 -0.4 496,451 - CSW01_17025 0.48 -0.4 496,484 - CSW01_17025 0.50 -1.3 496,492 + CSW01_17025 0.51 +1.3 496,608 - CSW01_17025 0.60 -2.2 496,655 - CSW01_17025 0.64 -0.6 496,680 - CSW01_17025 0.66 -2.7 496,829 + CSW01_17025 0.78 -0.6 496,877 + CSW01_17025 0.82 -0.7 496,958 + CSW01_17025 0.89 +0.2 496,986 + +1.2 497,014 + -1.6 497,161 + -0.3 497,251 - +0.3 497,251 - -0.3 497,251 - +0.5 497,251 - +0.3 497,251 - -0.1 497,251 - -3.2 497,360 + -2.6 497,397 + -0.4 497,516 + CSW01_17030 0.17 +0.7 497,524 - CSW01_17030 0.19 +1.9 497,563 - CSW01_17030 0.29 +1.2 497,563 - CSW01_17030 0.29 +2.7 497,565 + CSW01_17030 0.30 -2.1 497,565 + CSW01_17030 0.30 -0.8 497,599 - CSW01_17030 0.39 +0.9 497,692 + CSW01_17030 0.64 -1.9 497,805 + +0.5 497,898 - CSW01_17035 0.22 +0.3
Or see this region's nucleotide sequence